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Medical datasets

archive 2025-07-28

394 datasets carry the modality tag "Medical", ordered by the archive's paper count. Page 5 of 9: 48 shown of 394. Facet routes are this site's own (the archive records the tag string, not a page).

The archive holds 12,214 dataset rows; 12,172 are listed. 6 are withheld from every listing and count here as vandalised before snapshot (6 with contact-centre spam in the title, 0 with a spam description on a row that has no homepage, no paper and no papers counted; none with more than 1 paper, 0 with a benchmark), listed in withheld.json; 1 listed row carries a vandalised description, withheld on its page. This gate never withholds a row with a homepage or a paper that resolves, and a clean description; the content rules below withhold a row whose name is spam whatever else it carries. The gate is a phrase list: these are the rows it caught, not a claim that the rest is clean. Before that gate, the site's content rules withhold 36 more rows (invite-code, gambling, travel-booking, contact-centre and similar spam in the name or on a row with nothing real behind it); they have no page and are listed in withheld.json.

Medical datasets 193–240 of 394

CMMD (The Chinese Mammography Database)

Breast carcinoma is the second largest cancer in the world among women.

Medical Breast Cancer Detection

3 papers · 1 benchmark

CheXlocalize

CheXlocalize is a radiologist-annotated segmentation dataset on chest X-rays.

Images Biomedical Medical Semantic Segmentation Medical Image Segmentation 2D Semantic Segmentation Weakly-Supervised Semantic Segmentation Weakly supervised Semantic Segmentation Weakly-Supervised Object Segmentation+2 tasks

3 papers · 0 benchmarks

ExtMarker (3D motion of chest external markers)

Three-dimensional position of external markers placed on the chest and abdomen of healthy individuals breathing during intervals from 73s to 222s.

Medical Time series Time Series Forecasting Multivariate Time Series Forecasting Univariate Time Series Forecasting Time Series Prediction Respiratory motion forecasting

3 papers · 1 benchmark

FetReg

Fetoscopic Placental Vessel Segmentation and Registration (FetReg) is a large-scale multi-centre dataset for the development of generalized and robust semantic segmentation and video mosaicking algorithms for the fetal environment with a…

Images Medical Medical Image Segmentation

3 papers · 0 benchmarks

GraSP (Holistic and Multi-Granular Surgical Scene Understanding of Prostatectomies)

Holistic and Multi-Granular Surgical Scene Understanding of Prostatectomies (GraSP) dataset, a curated benchmark that models surgical scene understanding as a hierarchy of complementary tasks with varying levels of granularity.

Videos Medical Action Localization Instance Segmentation Surgical phase recognition

3 papers · 1 benchmark

HiRID

HiRID is a freely accessible critical care dataset containing data relating to almost 34 thousand patient admissions to the Department of Intensive Care Medicine of the Bern University Hospital, Switzerland (ICU), an interdisciplinary…

Medical Time series ICU Mortality Patient Phenotyping Circulatory Failure Respiratory Failure Kidney Function Remaining Length of Stay

3 papers · 6 benchmarks

IBC (Individual Brain Charting)

The Individual Brain Charting (IBC) project aims at providing a new generation of functional-brain atlases.

Medical fMRI MRI

3 papers · 0 benchmarks

Kvasir-VQA (A Text-Image Pair GI Tract Dataset)

The Kvasir-VQA dataset is an extended dataset derived from the HyperKvasir and Kvasir-Instrument datasets, augmented with question-and-answer annotations.

Images Texts Medical Tabular Image Generation Visual Question Answering Image Captioning Medical Diagnosis Medical Visual Question Answering Medical Image Generation

3 papers · 0 benchmarks

KvasirCapsule-SEG

The dataset contains a Video capsule endoscopy dataset for polyp segmentation.

Images Biomedical Medical Cad Semantic Segmentation Medical Image Segmentation Real-Time Semantic Segmentation Colorectal Polyps Characterization

3 papers · 1 benchmark

LKS (Liver Kidney Stomach)

LKS is a dataset of 684 Liver-Kidney-Stomach immunofluorescence whole slide images (WSIs) used in the investigation of autoimmune liver disease.

Medical Image Classification whole slide images

3 papers · 0 benchmarks

MIMIC-IV-ECG (MIMIC-IV-ECG: Diagnostic Electrocardiogram Matched Subset)

The MIMIC-IV-ECG module contains approximately 800,000 diagnostic electrocardiograms across nearly 160,000 unique patients.

Medical Electrocardiography (ECG)ECG Classification

3 papers · 0 benchmarks

MIMIC-SPARQL

Question Answering (QA) is a widely-used framework for developing and evaluating an intelligent machine.

Texts Graphs Medical Question Answering Semantic Parsing Graph Learning

3 papers · 0 benchmarks

MIT-BIH AFDB (MIT-BIH Atrial Fibrilation Database)

This database includes 25 long-term ECG recordings of human subjects with atrial fibrillation (mostly paroxysmal).

Medical Time series

3 papers · 0 benchmarks

MM-OR

Operating rooms (ORs) are complex, high-stakes environments requiring precise understanding of interactions among medical staff, tools, and equipment for enhancing surgical assistance, situational awareness, and patient safety.

Images Videos Texts Graphs 3D Audio Point cloud Medical Time series Speech RGB-D 2D Panoptic Segmentation Scene Graph Generation Action Anticipation Video Segmentation Video Panoptic Segmentation Surgical phase recognition+2 tasks

3 papers · 3 benchmarks

Medico automatic polyp segmentation challenge (dataset)

The “Medico automatic polyp segmentation challenge” aims to develop computer-aided diagnosis systems for automatic polyp segmentation to detect all types of polyps (for example, irregular polyp, smaller or flat polyps) with high efficiency…

Images Biomedical Medical Semantic Segmentation Medical Image Segmentation Real-Time Semantic Segmentation

3 papers · 1 benchmark

NinaPro DB2 (DB2 - 40 Intact Subjects - Delsys Trigno electrodes)

The second Ninapro database includes 40 intact subjects and it is thoroughly described in the paper: "Manfredo Atzori, Arjan Gijsberts, Claudio Castellini, Barbara Caputo, Anne-Gabrielle Mittaz Hager, Simone Elsig, Giorgio Giatsidis,…

Biomedical Medical Time series EMG Gesture Recognition

3 papers · 0 benchmarks

OCTAGON (OCTAGON Dataset)

The OCTAGON dataset is a set of Angiography by Octical Coherence Tomography images (OCT-A) used to the segmentation of the Foveal Avascular Zone (FAZ).

Images Medical

3 papers · 0 benchmarks

ORVS (Online Retinal image for Vessel Segmentation (ORVS))

The ORVS dataset has been newly established as a collaboration between the computer science and visual-science departments at the University of Calgary.

Images Medical

3 papers · 0 benchmarks

PWDB (Pulse Wave Database)

Overview This database of simulated arterial pulse waves is designed to be representative of a sample of pulse waves measured from healthy adults.

Biology Biomedical Medical Time series

3 papers · 0 benchmarks

Placenta

Placenta is a benchmark dataset for node classification in an underexplored domain: predicting microanatomical tissue structures from cell graphs in placenta histology whole slide images.

Graphs Biomedical Medical Node Classification Community Detection Graph Clustering

3 papers · 1 benchmark

Prostate MRI Segmentation Dataset

This prostate MRI segmentation dataset is collected from six different data sources.

Medical Meta-Learning Domain Generalization

3 papers · 0 benchmarks

SMILE-UHURA (Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiogram)

The human brain receives nutrients and oxygen through an intricate network of blood vessels.

Images Medical MRI Segmentation MRI segmentation

3 papers · 0 benchmarks

ShARe/CLEF 2014: Task 2 Disorders

Texts Medical Named Entity Recognition (NER)Entity Linking Weakly-Supervised Named Entity Recognition Negation Detection Weakly Supervised Classification

3 papers · 1 benchmark

SkinCon (SKIN Concepts Dataset)

SkinCon is a skin disease dataset densely annotated by dermatologists.

Images Medical Interpretable Machine Learning

3 papers · 0 benchmarks

SurgT

SurgT is a dataset for benchmarking 2D Trackers in Minimally Invasive Surgery (MIS).

Videos Medical Visual Tracking

3 papers · 0 benchmarks

The QUAERO French Medical Corpus

A vast amount of information in the biomedical domain is available as natural language free text.

Texts Medical Named Entity Recognition (NER)Nested Named Entity Recognition Medical Named Entity Recognition

3 papers · 0 benchmarks

US-4

The US-4 is a dataset of Ultrasound (US) images.

Images Medical Contrastive Learning

3 papers · 0 benchmarks

BioVid (BioVid Heat Pain Database)

To advance methods for pain assessment, in particular automatic assessment methods, the BioVid Heat Pain Database was collected in a collaboration of the Neuro-Information Technology group of the University of Magdeburg and the Medical…

Videos Biomedical Medical

2 papers · 0 benchmarks

Breast Lesion Detection in Ultrasound Videos (CVA-Net)

The breast lesion detection in ultrasound videos dataset uses a clip-level and video-level feature aggregated network (CVA-Net) and consists of 188 ultrasound videos, of which 113 are labeled malignant and 75 benign.

Images Videos Medical Breast Cancer Detection Breast Tumour Classification Lesion Detection

2 papers · 0 benchmarks

BreastClassifications4 ([MIMBCD-UI] UTA4: Severity & Pathology Classifications Dataset)

Several datasets are fostering innovation in higher-level functions for everyone, everywhere.

Images Biomedical Medical Tabular Classification Medical Diagnosis Breast Cancer Detection Breast Tumour Classification

2 papers · 0 benchmarks

CENTER-TBI (Collaborative European NeuroTrauma Effectiveness Research in TBI)

The CENTER-TBI database contains prospectively collected data of more than 4,500 patients with TBI in Europe.

Medical

2 papers · 0 benchmarks

Chest wall lung sound dataset

Annotated audio files (separate combined annotation file) of lung sounds as recorded from various vantage points of the chest wall.

Audio Medical Time series Audio Classification Lung Sound Classification Asthmatic Lung Sound Classification Lung Disease Classification

2 papers · 1 benchmark

Chest x-ray landmark dataset

Set of landmark annotations for JSRT, Montgomery, Shenzhen and a subset of Padchest datasets

Medical Landmark Recognition

2 papers · 0 benchmarks

Colorectal Adenoma

Colorectal Adenoma contains 177 whole slide images (156 contain adenoma) gathered and labelled by pathologists from the Department of Pathology, The Chinese PLA General Hospital.

Images Medical Semantic Segmentation Multiple Instance Learning

2 papers · 0 benchmarks

DeepFluoroLabeling-IPCAI2020

This collection contains data and code associated with the IPCAI/IJCARS 2020 paper “Automatic Annotation of Hip Anatomy in Fluoroscopy for Robust and Efficient 2D/3D Registration.” The data hosted here consists of annotated datasets of…

Images 3D Biomedical Medical

2 papers · 0 benchmarks

DisKnE (Disease Knowledge Evaluation)

DisKnE is a benchmark for Disease Knowledge Evaluation built from MedNLI and MEDIQA-NLI.

Texts Medical

2 papers · 0 benchmarks

Drunkard's Dataset

Estimating camera motion in deformable scenes poses a complex and open research challenge.

Videos 3D Medical RGB-D Pose Estimation 3D Reconstruction Visual Tracking Pose Tracking Single-View 3D Reconstruction Visual Odometry+9 tasks

2 papers · 1 benchmark

Duke Lung Nodule Dataset 2024

Background: Lung cancer risk classification is an increasingly important area of research as low-dose thoracic CT screening programs have become standard of care for patients at high risk for lung cancer.

Images 3D Biomedical Medical Medical Diagnosis Lung Cancer Diagnosis

2 papers · 1 benchmark

EPISURG (EPISURG: a dataset of postoperative MRI for quantitative analysis of resection neurosurgery for refractory epilepsy)

EPISURG is a clinical dataset of T1-weighted magnetic resonance images (MRI) from 430 epileptic patients who underwent resective brain surgery at the National Hospital of Neurology and Neurosurgery (Queen Square, London, United Kingdom)…

Images 3D Medical MRI 3D Medical Imaging Segmentation

2 papers · 0 benchmarks

EchoCP

EchoCP is an echocardiography dataset in cTTE targeting PFO (Patent foramen ovale) diagnosis.

Medical

2 papers · 0 benchmarks

Endotect Polyp Segmentation Challenge Dataset

A challenge that consists of three tasks, each targeting a different requirement for in-clinic use.

Images Biomedical Medical Image Classification Object Detection Semantic Segmentation Medical Image Segmentation Real-Time Object Detection Real-Time Semantic Segmentation

2 papers · 1 benchmark

HCP Aging (Lifespan Human Connectome Project Aging)

Lifespan HCP Release 2.0 includes cross-sectional visit 1 (V1) preprocessed structural and functional imaging data, unprocessed V1 imaging data for all included modalities (structural, high-res hippocampal T2, resting state fMRI, task…

Images 3D Medical Time series Classification Graph Classification

2 papers · 1 benchmark

ISIC 2017 Task 2

The ISIC 2017 dataset was published by the International Skin Imaging Collaboration (ISIC) as a large-scale dataset of dermoscopy images.

Images Medical Lesion Segmentation Lesion Classification

2 papers · 0 benchmarks

ImDrug

ImDrug is a comprehensive benchmark with an open-source Python library which consists of 4 imbalance settings, 11 AI-ready datasets, 54 learning tasks and 16 baseline algorithms tailored for imbalanced learning.

Medical Drug Discovery Fairness

2 papers · 0 benchmarks

Kvasir-Capsule

Kvasir-Capsule dataset is the largest publicly released VCE dataset.

Images Biomedical Medical Image Classification Object Detection General Classification Colorectal Polyps Characterization

2 papers · 0 benchmarks

LeukemiaAttri

The LeukemiaAttri dataset is a large-scale, multi-domain collection of microscopy images derived from leukemia patient samples, enriched with detailed morphological information.

Images Biology Biomedical Medical Object Detection Domain Adaptation Weakly Supervised Object Detection Object Counting Unsupervised Object Detection Cancer type classification+1 tasks

2 papers · 2 benchmarks

MCSCSet

MCSCSet is a large-scale specialist-annotated dataset, designed for the task of Medical-domain Chinese Spelling Correction that contains about 200k samples.

Texts Medical Optical Character Recognition (OCR)Spelling Correction

2 papers · 0 benchmarks

MHSMA (The Modified Human Sperm Morphology Analysis)

The MHSMA dataset is a collection of human sperm images from 235 patients with male factor infertility.

Images Medical

2 papers · 0 benchmarks

Paper counts and descriptions are the archive's, frozen 2025-07-28; no citation counts, no stars, no trending. Sorting by "most cited" or "newest" was a live-site feature the archive does not carry.

Medical datasets

Filter 39 modality tags shown of 39, by dataset count; the full filter by modality, task and language is on /datasets

Medical datasets 193–240 of 394