whole slide images

Benchmarks archive 2025-07-28

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Libraries

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Datasets archive 2025-07-28

5 datasets whose archive record lists this task, ordered by the archive's paper count.

Subtasks archive 2025-07-28

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Most implemented papers archive 2025-07-28

30 shown of 321 papers with code (745 tagged with this task in all), ordered by repositories listed in the archive, not by stars (the archive holds no stars, so PwC's “Social” and “Latest” sorts cannot be reproduced). Papers without a page here are shown as plain text.

• PanNuke Dataset Extension, Insights and Baselines
  24 Mar 2020 8 repositories listed Syntology ran 4 of 40 samples · 36 unverified · 1 pointer-only (licence)
  The emerging area of computational pathology (CPath) is ripe ground for the application of deep learning (DL) methods to healthcare due to the sheer volume of raw pixel data in whole-slide images (WSIs) of cancerous…
• FALFormer: Feature-aware Landmarks self-attention for Whole-slide Image Classification
  10 Jul 2024 5 repositories listed
  Herein, we propose an efficient and effective slide-level classification model, named as FALFormer, that can process a WSI as a whole so as to fully exploit the relationship among the entire patches and to improve the…
• Assessment of Cell Nuclei AI Foundation Models in Kidney Pathology
  9 Aug 2024 4 repositories listed
  Among the evaluated models, CellViT demonstrated superior performance in segmenting nuclei in kidney pathology.
• The Iris File Extension
  21 Apr 2025 3 repositories listed
  The growing adoption of digital pathology only intensifies the need for an intermediary digital slide format that emphasizes performance for use between slide servers and image management software.
• AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image Classification
  18 Jun 2024 3 repositories listed Syntology ran 8 of 12 samples · 4 unverified · 12 pointer-only (licence)
  While existing methods to alleviate this issue introduce complex modules or processing steps, such as multiple-stage training and teacher-student distillation, this paper proposes a simple yet effective regularization:…
• Multimodal Optimal Transport-based Co-Attention Transformer with Global Structure Consistency for Survival Prediction
  14 Jun 2023 3 repositories listed Syntology ran 10 of 18 samples · 8 unverified · 18 pointer-only (licence)
  Survival prediction is a complicated ordinal regression task that aims to predict the ranking risk of death, which generally benefits from the integration of histology and genomic data.
• Deep Learning for Identifying Metastatic Breast Cancer
  18 Jun 2016 3 repositories listed
  The International Symposium on Biomedical Imaging (ISBI) held a grand challenge to evaluate computational systems for the automated detection of metastatic breast cancer in whole slide images of sentinel lymph node…
• Molecular-driven Foundation Model for Oncologic Pathology
  28 Jan 2025 2 repositories listed
  Foundation models are reshaping computational pathology by enabling transfer learning, where models pre-trained on vast datasets can be adapted for downstream diagnostic, prognostic, and therapeutic response tasks.
• ECTIL: Label-efficient Computational Tumour Infiltrating Lymphocyte (TIL) assessment in breast cancer: Multicentre validation in 2,340 patients with breast cancer
  24 Jan 2025 2 repositories listed
  We propose and validate a fundamentally simpler deep learning based CTA that can be trained in only ten minutes on hundredfold fewer pathologist annotations.
• A Knowledge-enhanced Pathology Vision-language Foundation Model for Cancer Diagnosis
  17 Dec 2024 2 repositories listed
  To derive more nuanced image and text representations, we propose a novel knowledge-enhanced vision-language pre-training approach that integrates disease knowledge into the alignment within hierarchical semantic groups…
• De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy
  16 Oct 2024 2 repositories listed
  Medical data employed in research frequently comprises sensitive patient health information (PHI), which is subject to rigorous legal frameworks such as the General Data Protection Regulation (GDPR) or the Health…
• A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model
  22 Jul 2024 2 repositories listed Syntology ran 9 of 11 samples · 2 unverified · 11 pointer-only (licence)
  In this study, for the first time, we develop a pathology foundation model incorporating three levels of modalities: pathology slides, pathology reports, and gene expression data, which resulted in 26, 169 slide-level…
• Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology
  19 May 2024 2 repositories listed Syntology ran 5 of 9 samples · 4 unverified · 9 pointer-only (licence)
  Representation learning of pathology whole-slide images (WSIs) has been has primarily relied on weak supervision with Multiple Instance Learning (MIL).
• PRISM: A Multi-Modal Generative Foundation Model for Slide-Level Histopathology
  16 May 2024 2 repositories listed
  Foundation models in computational pathology promise to unlock the development of new clinical decision support systems and models for precision medicine.
• Towards Large-Scale Training of Pathology Foundation Models
  24 Mar 2024 2 repositories listed Syntology ran 0 of 3 samples · 3 unverified · 3 pointer-only (licence)
  Driven by the recent advances in deep learning methods and, in particular, by the development of modern self-supervised learning algorithms, increased interest and efforts have been devoted to build foundation models…
• MambaMIL: Enhancing Long Sequence Modeling with Sequence Reordering in Computational Pathology
  11 Mar 2024 2 repositories listed Syntology ran 4 of 6 samples · 2 unverified · 6 pointer-only (licence)
  Multiple Instance Learning (MIL) has emerged as a dominant paradigm to extract discriminative feature representations within Whole Slide Images (WSIs) in computational pathology.
• Attention to detail: inter-resolution knowledge distillation
  11 Jan 2024 2 repositories listed
  The development of computer vision solutions for gigapixel images in digital pathology is hampered by significant computational limitations due to the large size of whole slide images.
• SoftCTM: Cell detection by soft instance segmentation and consideration of cell-tissue interaction
  19 Dec 2023 2 repositories listed
  We find that a "soft", probability-map instance segmentation ground truth leads to best model performance.
• Quilt-LLaVA: Visual Instruction Tuning by Extracting Localized Narratives from Open-Source Histopathology Videos
  7 Dec 2023 2 repositories listed Syntology ran 5 of 12 samples · 7 unverified
  Training multi-model models for histopathology requires instruction tuning datasets, which currently contain information for individual image patches, without a spatial grounding of the concepts within each patch and…
• Immunohistochemistry guided segmentation of benign epithelial cells, in situ lesions, and invasive epithelial cells in breast cancer slides
  22 Nov 2023 2 repositories listed
  In this study, we aimed to develop an AI model for segmentation of epithelial cells in sections from breast cancer.
• HEALNet: Multimodal Fusion for Heterogeneous Biomedical Data
  15 Nov 2023 2 repositories listed Syntology ran 6 of 11 samples · 5 unverified
  Technological advances in medical data collection, such as high-throughput genomic sequencing and digital high-resolution histopathology, have contributed to the rising requirement for multimodal biomedical modelling,…
• Artifact Restoration in Histology Images with Diffusion Probabilistic Models
  26 Jul 2023 2 repositories listed
  Histological whole slide images (WSIs) can be usually compromised by artifacts, such as tissue folding and bubbles, which will increase the examination difficulty for both pathologists and Computer-Aided Diagnosis (CAD)…
• Distill-SODA: Distilling Self-Supervised Vision Transformer for Source-Free Open-Set Domain Adaptation in Computational Pathology
  10 Jul 2023 2 repositories listed
  Developing computational pathology models is essential for reducing manual tissue typing from whole slide images, transferring knowledge from the source domain to an unlabeled, shifted target domain, and identifying…
• Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction
  13 Apr 2023 2 repositories listed Syntology ran 2 of 2 samples · 0 unverified · 2 pointer-only (licence)
  We propose fusing both modalities using a memory-efficient multimodal Transformer that can model interactions between pathway and histology patch tokens.
• A Dual-branch Self-supervised Representation Learning Framework for Tumour Segmentation in Whole Slide Images
  20 Mar 2023 2 repositories listed
  These SSL approaches, however, are not designed for handling multi-resolution WSIs, which limits their performance in learning discriminative image features.
• Uncertainty-Informed Deep Learning Models Enable High-Confidence Predictions for Digital Histopathology
  9 Apr 2022 2 repositories listed Syntology ran 0 of 11 samples · 11 unverified
  Furthermore, we show that UQ thresholding remains reliable in the setting of domain shift, with accurate high-confidence predictions of adenocarcinoma vs.
• DTFD-MIL: Double-Tier Feature Distillation Multiple Instance Learning for Histopathology Whole Slide Image Classification
  22 Mar 2022 2 repositories listed Syntology ran 2 of 6 samples · 4 unverified · 3 pointer-only (licence)
  Multiple instance learning (MIL) has been increasingly used in the classification of histopathology whole slide images (WSIs).
• A Pragmatic Machine Learning Approach to Quantify Tumor Infiltrating Lymphocytes in Whole Slide Images
  14 Feb 2022 2 repositories listed
  Our approach is to transfer an open source machine learning method for segmentation and classification of nuclei in H&E slides trained on public data to TIL quantification without manual labeling of our data.
• Code-free development and deployment of deep segmentation models for digital pathology
  16 Nov 2021 2 repositories listed
  Application of deep learning on histopathological whole slide images (WSIs) holds promise of improving diagnostic efficiency and reproducibility but is largely dependent on the ability to write computer code or purchase…
• Fast and Scalable Image Search For Histology
  28 Jul 2021 2 repositories listed
  Similar pathology image search offers the opportunity to comb through large historical repositories of gigapixel WSIs to identify cases with similar morphological features and can be particularly useful for diagnosing…

Syntology lines on 12 of the papers shown; no Syntology record for the others (a paper without an arXiv id cannot be joined to the graph, and absence from the graph layer is not a recorded non-run). “Ran” means the sample executed on a synthesized fixture, not that the paper's result was reproduced. Read from the graph 2026-09-24.