Papers › De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy

De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy

16 Oct 2024arXiv:2410.12402archive 2025-07-28

Moritz Rempe, Lukas Heine, Constantin Seibold, Fabian Hörst, Jens Kleesiek

Medical data employed in research frequently comprises sensitive patient health information (PHI), which is subject to rigorous legal frameworks such as the General Data Protection Regulation (GDPR) or the Health Insurance Portability and Accountability Act (HIPAA). Consequently, these types of data must be pseudonymized prior to utilisation, which presents a significant challenge for many researchers. Given the vast array of medical data, it is necessary to employ a variety of de-identification techniques. To facilitate the anonymization process for medical imaging data, we have developed an open-source tool that can be used to de-identify DICOM magnetic resonance images, computer tomography images, whole slide images and magnetic resonance twix raw data. Furthermore, the implementation of a neural network enables the removal of text within the images. The proposed tool automates an elaborate anonymization pipeline for multiple types of inputs, reducing the need for additional tools used for de-identification of imaging data. We make our code publicly available at https://github.com/code-lukas/medical_image_deidentification.

PaperPDFCode

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

Code

code-lukas/medical_image_deidentification officialmentioned in papermentioned on GitHubpytorch report
TIO-IKIM/medical_image_deidentification mentioned on GitHubpytorch report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

Not run by Syntology. Nothing on this page verifies that the listed code works.

Tasks

De-identificationwhole slide images

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections