Datasets › PanNuke
PanNuke
PanNuke is a semi automatically generated nuclei instance segmentation and classification dataset with exhaustive nuclei labels across 19 different tissue types. The dataset consists of 481 visual fields, of which 312 are randomly sampled from more than 20K whole slide images at different magnifications, from multiple data sources. In total the dataset contains 205,343 labeled nuclei, each with an instance segmentation mask.
Source: PanNuke Dataset Extension, Insights and Baselines Image Source: https://jgamper.github.io/PanNukeDataset/
Benchmarks archive 2025-07-28
All 4 leaderboards whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.
| First row (archive order) | Paper | Code | ||||
|---|---|---|---|---|---|---|
| Panoptic Segmentation | PanNuke | LKCell PQ 50.80 | LKCell: Efficient Cell Nuclei Instance Segmentation with... | hustvl/lkcell | 4 | Compare |
| Cell Detection | PanNuke | CellViT-SAM-H Average F1 0.83 | CellViT: Vision Transformers for Precise Cell... | tio-ikim/cellvit +2 | 1 | Compare |
| Cell Segmentation | PanNuke | PromptNu Average Dice 0.860 | Prompting Vision-Language Model for Nuclei Instance... | NucleiDet/PromptNu | 1 | Compare |
| Multi-tissue Nucleus Segmentation | PanNuke | SONNET Dice 0.824 | SONNET: A Self-Guided Ordinal Regression Neural Network... | QuIIL/Sonnet | 1 | Compare |
Papers archive 2025-07-28
6 shown of 6 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 61. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.
| Date | Samples run Syntology | |||
|---|---|---|---|---|
| Prompting Vision-Language Model for Nuclei Instance Segmentation and Classification | 1 | 1 | 27 Mar 2025 | not harvested |
| NuLite -- Lightweight and Fast Model for Nuclei Instance Segmentation and Classification | 1 | 1 | 3 Aug 2024 | not harvested |
| LKCell: Efficient Cell Nuclei Instance Segmentation with Large Convolution Kernels | 1 | 1 | 25 Jul 2024 | not harvested |
| CellViT: Vision Transformers for Precise Cell Segmentation and Classification | 3 | 2 | 27 Jun 2023 | ran 1 of 1 samples (0 unverified; 1 pointer-only for licence) |
| TSFD-Net: Tissue specific feature distillation network for nuclei segmentation and classification | 1 | 1 | 9 Mar 2022 | not harvested |
| SONNET: A Self-Guided Ordinal Regression Neural Network for Segmentation and Classification of Nuclei in Large-Scale Multi-Tissue Histology Images | 1 | 1 | 9 Feb 2022 | not harvested |
Dataset loaders archive 2025-07-28
2 loaders as listed in the archive; links are outbound and not re-checked here.
Tasks archive 2025-07-28
License archive 2025-07-28
CC BY-NC-SA 4.0
Modalities archive 2025-07-28
Languages archive 2025-07-28
No language tagged.
Variants archive 2025-07-28
- PanNuke
1 variant name, as the archive lists them.
Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections