Drug–drug Interaction Extraction

Description from the archive archive 2025-07-28.

Benchmarks archive 2025-07-28

3 leaderboard tables shown for this task, 3 with rows (a “benchmark” on this site is a table with at least one row, as on /sota), ordered by row count. “Best model” is the first row in the archive's own order at snapshot; nothing is re-ranked here and metric direction is not recorded in the archive. PwC's Trend sparklines are not in the archive, so that column is omitted.

Syntology column: samples harvested from the paper's repositories and executed on synthesized fixtures; “ran” is not a correctness claim and does not order the table. A dash means no Syntology record for that paper, not a recorded non-run. Read from the graph 2026-09-24.

Libraries

Not in the archive: the export carries no per-task library table, so there is nothing to show at snapshot 2025-07-28.

Datasets archive 2025-07-28

3 datasets whose archive record lists this task, ordered by the archive's paper count.

Subtasks archive 2025-07-28

No subtask under this task in the archive's task tree.

Parent tasks archive 2025-07-28

Most implemented papers archive 2025-07-28

13 shown of 13 papers with code (27 tagged with this task in all), ordered by repositories listed in the archive, not by stars (the archive holds no stars, so PwC's “Social” and “Latest” sorts cannot be reproduced). Papers without a page here are shown as plain text.

• BioBERT: a pre-trained biomedical language representation model for biomedical text mining
  25 Jan 2019 19 repositories listed Syntology ran 4 of 25 samples · 21 unverified · 1 pointer-only (licence)
  Biomedical text mining is becoming increasingly important as the number of biomedical documents rapidly grows.
• Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets
  13 Jun 2019 4 repositories listed Syntology ran 0 of 2 samples · 2 unverified
• A Dataset for N-ary Relation Extraction of Drug Combinations
  4 May 2022 2 repositories listed
  Furthermore, the relations in this dataset predominantly require language understanding beyond the sentence level, adding to the challenge of this task.
• SSI–DDI: Substructure–Substructure Interactions for Drug–Drug Interaction Prediction
  7 Nov 2021 2 repositories listed
  A major concern with co-administration of different drugs is the high risk of interference between their mechanisms of action, known as adverse drug–drug interactions (DDIs), which can cause serious injuries to the…
• ELECTRAMed: a new pre-trained language representation model for biomedical NLP
  19 Apr 2021 2 repositories listed
  The overwhelming amount of biomedical scientific texts calls for the development of effective language models able to tackle a wide range of biomedical natural language processing (NLP) tasks.
• CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters
  20 Oct 2020 2 repositories listed Syntology ran 5 of 8 samples · 3 unverified
  Due to the compelling improvements brought by BERT, many recent representation models adopted the Transformer architecture as their main building block, consequently inheriting the wordpiece tokenization system despite…
• Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing
  31 Jul 2020 2 repositories listed
  In this paper, we challenge this assumption by showing that for domains with abundant unlabeled text, such as biomedicine, pretraining language models from scratch results in substantial gains over continual pretraining…
• End-to-End n-ary Relation Extraction for Combination Drug Therapies
  29 Mar 2023 1 repository listed
  Extracting combination therapies from scientific literature inherently constitutes an n-ary relation extraction problem.
• SciFive: a text-to-text transformer model for biomedical literature
  28 May 2021 1 repository listed Syntology ran 0 of 5 samples · 5 unverified
  In this report, we introduce SciFive, a domain-specific T5 model that has been pre-trained on large biomedical corpora.
• EGFI: Drug-Drug Interaction Extraction and Generation with Fusion of Enriched Entity and Sentence Information
  25 Jan 2021 1 repository listed
  To address such a problem, we propose EGFI for extracting and consolidating drug interactions from large-scale medical literature text data.
• Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature
  24 Oct 2020 1 repository listed
  Specifically, we focus on drug description and molecular structure information as the drug database information.
• Drug-Drug Adverse Effect Prediction with Graph Co-Attention
  2 May 2019 1 repository listed
  Complex or co-existing diseases are commonly treated using drug combinations, which can lead to higher risk of adverse side effects.
• Drug-Drug Interaction Extraction from Biomedical Text Using Long Short Term Memory Network
  28 Jan 2017 1 repository listed
  The two models, {\it AB-LSTM} and {\it Joint AB-LSTM} also use attentive pooling in the output of Bi-LSTM layer to assign weights to features.

Syntology lines on 4 of the papers shown; no Syntology record for the others (a paper without an arXiv id cannot be joined to the graph, and absence from the graph layer is not a recorded non-run). “Ran” means the sample executed on a synthesized fixture, not that the paper's result was reproduced. Read from the graph 2026-09-24.