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DDI

Introduced in Semeval-2013 task 9: Extraction of drug-drug interactions from biomedical texts (ddiextraction 2013)1 Jan 2013 archive 2025-07-28

The DDIExtraction 2013 task relies on the DDI corpus which contains MedLine abstracts on drug-drug interactions as well as documents describing drug-drug interactions from the DrugBank database.

Source: DDIExtraction 2013 Image Source: https://www.aclweb.org/anthology/S13-2056.pdf

Homepage Benchmarks Papers JSON

Benchmarks archive 2025-07-28

All 3 leaderboards whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.

		First row (archive order)	Paper	Code
Drug–drug Interaction Extraction	DDI extraction 2013 corpus	DESC+MOL+SciBERT F1 0.8408	Using Drug Descriptions and Molecular Structures for...	tticoin/DESC_MOL-DDIE	10	Compare
Relation Extraction	DDI	BioLinkBERT (large) F1 83.35	LinkBERT: Pretraining Language Models with Document Links	michiyasunaga/LinkBERT	3	Compare
Medical Relation Extraction	DDI extraction 2013 corpus	BioLinkBERT (large) F1 83.35	LinkBERT: Pretraining Language Models with Document Links	michiyasunaga/LinkBERT	2	Compare

Papers archive 2025-07-28

13 shown of 13 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 54. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.

			Date	Samples run Syntology
LinkBERT: Pretraining Language Models with Document Links	1	2	29 Mar 2022	ran 0 of 14 samples (14 unverified)
SciFive: a text-to-text transformer model for biomedical literature	1	1	28 May 2021	ran 0 of 5 samples (5 unverified)
Improving Biomedical Pretrained Language Models with Knowledge	1	1	21 Apr 2021	not harvested
ELECTRAMed: a new pre-trained language representation model for biomedical NLP	2	1	19 Apr 2021	not harvested
Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature	1	1	24 Oct 2020	not harvested
CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters	2	1	20 Oct 2020	ran 5 of 8 samples (3 unverified)
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing	2	2	31 Jul 2020	not harvested
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets	4	1	13 Jun 2019	ran 0 of 2 samples (2 unverified)
BioBERT: a pre-trained biomedical language representation model for biomedical text mining	19	1	25 Jan 2019	ran 4 of 25 samples (21 unverified; 1 pointer-only for licence)
Enhancing Drug-Drug Interaction Extraction from Texts by Molecular Structure Information	0	1	15 May 2018	not harvested
Drug–drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths	0	1	25 Oct 2017	not harvested
A graph kernel based on context vectors for extracting drug–drug interactions	0	1	21 Mar 2016	not harvested
Extracting drug–drug interactions from literature using a rich feature-based linear kernel approach	0	1	19 Mar 2015	not harvested

Dataset loaders archive 2025-07-28

No loader listed in the archive.

Tasks archive 2025-07-28

Relation Extraction Drug–drug Interaction Extraction Medical Relation Extraction

License archive 2025-07-28

CC BY-NC-SA 3.0

Modalities archive 2025-07-28

Texts

Languages archive 2025-07-28

No language tagged.

Variants archive 2025-07-28

DDI extraction 2013 corpus
DDI

2 variant names, as the archive lists them.

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