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Medical Image Segmentation datasets
archive 2025-07-2852 datasets carry the task tag "Medical Image Segmentation" (the task itself: Medical Image Segmentation), ordered by the archive's paper count. Page 1 of 2: 48 shown of 52. Facet routes are this site's own (the archive records the tag string, not a page).
The archive holds 12,214 dataset rows; 12,172 are listed. 6 are withheld from every listing and count here as vandalised before snapshot (6 with contact-centre spam in the title, 0 with a spam description on a row that has no homepage, no paper and no papers counted; none with more than 1 paper, 0 with a benchmark), listed in withheld.json; 1 listed row carries a vandalised description, withheld on its page. This gate never withholds a row with a homepage or a paper that resolves, and a clean description; the content rules below withhold a row whose name is spam whatever else it carries. The gate is a phrase list: these are the rows it caught, not a claim that the rest is clean. Before that gate, the site's content rules withhold 36 more rows (invite-code, gambling, travel-booking, contact-centre and similar spam in the name or on a row with nothing real behind it); they have no page and are listed in withheld.json.
Filter 50 task tags shown of 3,717, by dataset count; the full filter by modality, task and language is on /datasets
All 12,172
Question Answering 413Semantic Segmentation 347Object Detection 332Image Classification 283Classification 222Text Classification 167Language Modelling 166Text Generation 162Visual Question Answering (VQA) 144Named Entity Recognition (NER) 130Pose Estimation 124Anomaly Detection 119Action Recognition 115Instance Segmentation 111Sentiment Analysis 104Text Summarization 98Domain Adaptation 96Speech Recognition 96Reading Comprehension 95Information Retrieval 932D Object Detection 92Image Retrieval 87Machine Translation 82Relation Extraction 822D Semantic Segmentation 81Natural Language Inference 81Image Captioning 79Image Generation 79Depth Estimation 77Node Classification 75Natural Language Understanding 72Autonomous Driving 70Code Generation 70Object Tracking 693D Object Detection 67Face Recognition 67Link Prediction 67Person Re-Identification 65Data Augmentation 63Multi-Task Learning 593D Reconstruction 58Common Sense Reasoning 56Recommendation Systems 56Video Understanding 56Optical Character Recognition (OCR) 55Graph Classification 54Abstractive Text Summarization 52Emotion Recognition 52Medical Image Segmentation 52Word Embeddings 52
Medical Image Segmentation datasets 1–48 of 52
DRIVE (Digital Retinal Images for Vessel Extraction)
The Digital Retinal Images for Vessel Extraction (DRIVE) dataset is a dataset for retinal vessel segmentation.
311 papers · 2 benchmarks
Kvasir-SEG is an open-access dataset of gastrointestinal polyp images and corresponding segmentation masks, manually annotated by a medical doctor and then verified by an experienced gastroenterologist.
201 papers · 2 benchmarks
Kvasir (The Kvasir Dataset)
The KVASIR Dataset was released as part of the medical multimedia challenge presented by MediaEval.
117 papers · 1 benchmark
GlaS (Gland Segmentation in Colon Histology Images Challenge)
The dataset used in this challenge consists of 165 images derived from 16 H&E stained histological sections of stage T3 or T42 colorectal adenocarcinoma.
112 papers · 1 benchmark
Despite the considerable progress in automatic abdominal multi-organ segmentation from CT/MRI scans in recent years, a comprehensive evaluation of the models' capabilities is hampered by the lack of a large-scale benchmark from diverse…
105 papers · 1 benchmark
The Medical Segmentation Decathlon is a collection of medical image segmentation datasets.
97 papers · 1 benchmark
The PROMISE12 dataset was made available for the MICCAI 2012 prostate segmentation challenge.
84 papers · 2 benchmarks
CHASEDB1 is a dataset for retinal vessel segmentation which contains 28 color retina images with the size of 999×960 pixels which are collected from both left and right eyes of 14 school children.
59 papers · 2 benchmarks
CVC-ClinicDB is an open-access dataset of 612 images with a resolution of 384×288 from 31 colonoscopy sequences.It is used for medical image segmentation, in particular polyp detection in colonoscopy videos.
54 papers · 1 benchmark
ACDC (Automated Cardiac Diagnosis Challenge)
The goal of the Automated Cardiac Diagnosis Challenge (ACDC) challenge is to: - compare the performance of automatic methods on the segmentation of the left ventricular endocardium and epicardium as the right ventricular endocardium for…
52 papers · 5 benchmarks
2018 Data Science Bowl (2018 Data Science Bowl Find the nuclei in divergent images to advance medical discovery)
This dataset contains a large number of segmented nuclei images.
49 papers · 1 benchmark
LiTS17 (Liver Tumor Segmentation Challenge 2017)
LiTS17 is a liver tumor segmentation benchmark.
45 papers · 3 benchmarks
WORD (Whole abdominal Organs Dataset)
WORD is a dataset for organ semantic segmentation that contains 150 abdominal CT volumes (30,495 slices) and each volume has 16 organs with fine pixel-level annotations and scribble-based sparse annotation, which may be the largest dataset…
38 papers · 0 benchmarks
Under Institutional Review Board (IRB) supervision, 50 abdomen CT scans of were randomly selected from a combination of an ongoing colorectal cancer chemotherapy trial, and a retrospective ventral hernia study.
31 papers · 3 benchmarks
Introduced by Da et al.
23 papers · 1 benchmark
MosMedData contains anonymised human lung computed tomography (CT) scans with COVID-19 related findings, as well as without such findings.
22 papers · 1 benchmark
Consists of annotated frames containing GI procedure tools such as snares, balloons and biopsy forceps, etc.
19 papers · 3 benchmarks
CrossMoDA (Cross-Modality Domain Adaptation)
CrossMoDA is a large and multi-class benchmark for unsupervised cross-modality Domain Adaptation.
18 papers · 0 benchmarks
The dataset for this challenge was obtained by carefully annotating tissue images of several patients with tumors of different organs and who were diagnosed at multiple hospitals.
17 papers · 2 benchmarks
The CELL benchmark is made of fluorescence microscopy images of cell.
12 papers · 3 benchmarks
HyperKvasir dataset contains 110,079 images and 374 videos where it captures anatomical landmarks and pathological and normal findings.
12 papers · 2 benchmarks
We release expert-made scribble annotations for the medical ACDC dataset [1].
10 papers · 1 benchmark
This dataset contains 1200 images (1000 WLI images and 200 FICE images) with fine-grained segmentation annotations.
9 papers · 1 benchmark
MyoPS is a dataset for myocardial pathology segmentation combining three-sequence cardiac magnetic resonance (CMR) images, which was first proposed in the MyoPS challenge, in conjunction with MICCAI 2020.
8 papers · 0 benchmarks
ROBUST-MIS (Robust Medical Instrument Segmentation Challenge 2019)
The ROBUST-MIS dataset was made available to support the Robust Medical Instrument Segmentation (ROBUST-MIS) Challenge 2019, part of the Endoscopic Vision Challenge associated with MICCAI.
8 papers · 1 benchmark
The CheXmask Database presents a comprehensive, uniformly annotated collection of chest radiographs, constructed from five public databases: ChestX-ray8, Chexpert, MIMIC-CXR-JPG, Padchest and VinDr-CXR.
7 papers · 0 benchmarks
ARCADE (Automatic Region-based Coronary Artery Disease diagnostics using x-ray angiography imagEs Dataset)
ARCADE: Automatic Region-based Coronary Artery Disease diagnostics using x-ray angiography imagEs Dataset Phase 2 consist of two folders with 300 images in each of them as well as annotations.
6 papers · 0 benchmarks
This brain anatomy segmentation dataset has 1300 2D US scans for training and 329 for testing.
5 papers · 1 benchmark
Kvasir-Sessile dataset (Sessile polyps from Kvasir-SEG)
The Kvasir-SEG dataset includes 196 polyps smaller than 10 mm classified as Paris class 1 sessile or Paris class IIa.
5 papers · 0 benchmarks
RITE (Retinal Images vessel Tree Extraction)
The RITE (Retinal Images vessel Tree Extraction) is a database that enables comparative studies on segmentation or classification of arteries and veins on retinal fundus images, which is established based on the public available DRIVE…
5 papers · 2 benchmarks
Inolves an annotated a large number of cells, including normal epithelial and myoepithelial breast cells (localized in ducts and lobules), invasive carcinomatous cells, fibroblasts, endothelial cells, adipocytes, macrophages and…
5 papers · 1 benchmark
CheXlocalize is a radiologist-annotated segmentation dataset on chest X-rays.
3 papers · 0 benchmarks
Fetoscopic Placental Vessel Segmentation and Registration (FetReg) is a large-scale multi-centre dataset for the development of generalized and robust semantic segmentation and video mosaicking algorithms for the fetal environment with a…
3 papers · 0 benchmarks
The dataset contains a Video capsule endoscopy dataset for polyp segmentation.
3 papers · 1 benchmark
The “Medico automatic polyp segmentation challenge” aims to develop computer-aided diagnosis systems for automatic polyp segmentation to detect all types of polyps (for example, irregular polyp, smaller or flat polyps) with high efficiency…
3 papers · 1 benchmark
The Vocal Folds dataset is a dataset for automatic segmentation of laryngeal endoscopic images.
3 papers · 0 benchmarks
The dataset available for download on this webpage represents a 5x5x5µm section taken from the CA1 hippocampus region of the brain, corresponding to a 1065x2048x1536 volume.
2 papers · 1 benchmark
A challenge that consists of three tasks, each targeting a different requirement for in-clinic use.
2 papers · 1 benchmark
The fetoscopy placenta dataset is associated with our MICCAI2020 publication titled “Deep Placental Vessel Segmentation for Fetoscopic Mosaicking”.
2 papers · 0 benchmarks
Automated measurement of fetal head circumference using 2D ultrasound images
2 papers · 0 benchmarks
This database is provided and maintained by Dr.
2 papers · 1 benchmark
The AneuX morphology database includes data from 3 different data sources: AneuX, @neurIST and Aneurisk.
1 paper · 0 benchmarks
A multi-tasking oral ulcer dataset (Autooral dataset) is proposed.
1 paper · 1 benchmark
BreastDICOM4 ([MIMBCD-UI] UTA4: Medical Imaging DICOM Files Dataset)
Several datasets are fostering innovation in higher-level functions for everyone, everywhere.
1 paper · 1 benchmark
CoCaHis (Colon Cancer Histology Dataset)
Highlights • Publicly available dataset with 82 H&E stained images of frozen sections.
1 paper · 0 benchmarks
ENSeg Dataset Overview This dataset represents an enhanced subset of the ENS dataset.
1 paper · 1 benchmark
Extended Task10_Colon Medical Decathlon (Extended Task10_Colon of Medical Segmentation Decathlon dataset)
A dataset of abdominal CT studies in NifTi format from the open-source medical data repository Medical Decathlon was utilized.
1 paper · 1 benchmark
A dataset of A 3D Computed Tomography (CT) image dataset, ImageTBAD, for segmentation of Type-B Aortic Dissection is published.
1 paper · 0 benchmarks
Paper counts and descriptions are the archive's, frozen 2025-07-28; no citation counts, no stars, no trending. Sorting by "most cited" or "newest" was a live-site feature the archive does not carry.