Datasets › MoNuSeg

MoNuSeg

archive 2025-07-28

The dataset for this challenge was obtained by carefully annotating tissue images of several patients with tumors of different organs and who were diagnosed at multiple hospitals. This dataset was created by downloading H&E stained tissue images captured at 40x magnification from TCGA archive. H&E staining is a routine protocol to enhance the contrast of a tissue section and is commonly used for tumor assessment (grading, staging, etc.). Given the diversity of nuclei appearances across multiple organs and patients, and the richness of staining protocols adopted at multiple hospitals, the training datatset will enable the development of robust and generalizable nuclei segmentation techniques that will work right out of the box.

Source: MoNuSeg

Homepage Benchmarks Papers JSON

Benchmarks archive 2025-07-28

All 2 leaderboards whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.

		First row (archive order)	Paper	Code
Medical Image Segmentation	MoNuSeg	Stardist F1 84.6	Cell Detection with Star-convex Polygons	stardist/stardist +2	15	Compare
Cell Segmentation	MoNuSeg	PromptNu Average Dice 0.838	Prompting Vision-Language Model for Nuclei Instance...	NucleiDet/PromptNu	1	Compare

Papers archive 2025-07-28

10 shown of 10 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 17. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.

			Date	Samples run Syntology
Rethinking Decoder Design: Improving Biomarker Segmentation Using Depth-to-Space Restoration and Residual Linear Attention	1	1	23 Jun 2025	ran 1 of 1 samples (0 unverified; 1 pointer-only for licence)
Rethinking the Nested U-Net Approach: Enhancing Biomarker Segmentation with Attention Mechanisms and Multiscale Feature Fusion	1	1	8 Apr 2025	not harvested
Prompting Vision-Language Model for Nuclei Instance Segmentation and Classification	1	1	27 Mar 2025	not harvested
Hi-gMISnet: generalized medical image segmentation using DWT based multilayer fusion and dual mode attention into high resolution pGAN	1	1	20 May 2024	not harvested
Masked Diffusion as Self-supervised Representation Learner	1	1	10 Aug 2023	not harvested
Dual Cross-Attention for Medical Image Segmentation	1	1	30 Mar 2023	not harvested
HistoSeg : Quick attention with multi-loss function for multi-structure segmentation in digital histology images	1	1	1 Sep 2022	not harvested
LViT: Language meets Vision Transformer in Medical Image Segmentation	1	5	29 Jun 2022	ran 1 of 1 samples (0 unverified)
Medical Transformer: Gated Axial-Attention for Medical Image Segmentation	2	3	21 Feb 2021	not harvested
Cell Detection with Star-convex Polygons	3	1	9 Jun 2018	ran 1 of 33 samples (32 unverified; 2 pointer-only for licence)

Dataset loaders archive 2025-07-28

huggingface.co/datasets/RationAI/MoNuSeg huggingface/datasetstfpytorchjax

1 loader as listed in the archive; links are outbound and not re-checked here.

Tasks archive 2025-07-28

Semantic Segmentation Medical Image Segmentation Cell Segmentation Unsupervised nucleus segmentation

License archive 2025-07-28

CC BY-NC-SA 4.0

Modalities archive 2025-07-28

Images Medical

Languages archive 2025-07-28

No language tagged.

Variants archive 2025-07-28

MoNuSeg

1 variant name, as the archive lists them.

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