Epidemiology

Description from the archive archive 2025-07-28.

Benchmarks archive 2025-07-28

No benchmark for this task in the archive.

Libraries

Not in the archive: the export carries no per-task library table, so there is nothing to show at snapshot 2025-07-28.

Datasets archive 2025-07-28

1 dataset whose archive record lists this task, ordered by the archive's paper count.

Subtasks archive 2025-07-28

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Most implemented papers archive 2025-07-28

30 shown of 106 papers with code (425 tagged with this task in all), ordered by repositories listed in the archive, not by stars (the archive holds no stars, so PwC's “Social” and “Latest” sorts cannot be reproduced). Papers without a page here are shown as plain text.

• BayesFlow: Learning complex stochastic models with invertible neural networks
  13 Mar 2020 3 repositories listed
  In addition, our method incorporates a summary network trained to embed the observed data into maximally informative summary statistics.
• Spatio-temporal Diffusion Point Processes
  21 May 2023 2 repositories listed Syntology ran 7 of 7 samples · 0 unverified · 7 pointer-only (licence)
  To enhance the learning of each step, an elaborated spatio-temporal co-attention module is proposed to capture the interdependence between the event time and space adaptively.
• Practical and scalable simulations of non-Markovian stochastic processes and temporal networks with individual node properties
  9 Dec 2022 2 repositories listed
  Discrete stochastic processes are prevalent in natural systems, with applications in physics, biochemistry, epidemiology, sociology, and finance.
• Encoding physics to learn reaction-diffusion processes
  9 Jun 2021 2 repositories listed Syntology ran 3 of 8 samples · 5 unverified · 7 pointer-only (licence)
  Modeling complex spatiotemporal dynamical systems, such as the reaction-diffusion processes, have largely relied on partial differential equations (PDEs).
• EpidemiOptim: A Toolbox for the Optimization of Control Policies in Epidemiological Models
  9 Oct 2020 2 repositories listed
  Epidemiologists model the dynamics of epidemics in order to propose control strategies based on pharmaceutical and non-pharmaceutical interventions (contact limitation, lock down, vaccination, etc).
• Simulation-Based Inference for Global Health Decisions
  14 May 2020 2 repositories listed
  The COVID-19 pandemic has highlighted the importance of in-silico epidemiological modelling in predicting the dynamics of infectious diseases to inform health policy and decision makers about suitable prevention and…
• Multi-task Learning for Aggregated Data using Gaussian Processes
  22 Jun 2019 2 repositories listed Syntology ran 0 of 5 samples · 5 unverified
  Our model represents each task as the linear combination of the realizations of latent processes that are integrated at a different scale per task.
• Correspondence Analysis Using Neural Networks
  21 Feb 2019 2 repositories listed
  Correspondence analysis (CA) is a multivariate statistical tool used to visualize and interpret data dependencies.
• Did You Really Just Have a Heart Attack? Towards Robust Detection of Personal Health Mentions in Social Media
  26 Feb 2018 2 repositories listed
  The first, critical, task for these applications is classifying whether a personal health event was mentioned, which we call the (PHM) problem.
• A Simple Approximate Bayesian Inference Neural Surrogate for Stochastic Petri Net Models
  14 Jul 2025 1 repository listed
  Stochastic Petri Nets (SPNs) are an increasingly popular tool of choice for modeling discrete-event dynamics in areas such as epidemiology and systems biology, yet their parameter estimation remains challenging in…
• Clustering and Pruning in Causal Data Fusion
  21 May 2025 1 repository listed
  We generalize earlier results on a single data source and derive conditions for applying pruning and clustering in the case of multiple data sources.
• Structural-Temporal Coupling Anomaly Detection with Dynamic Graph Transformer
  13 May 2025 1 repository listed
  A major challenge with this task is the absence of structural-temporal coupling information, which decreases the ability of the representation to distinguish anomalies from normal instances.
• A Behaviour and Disease Model of Testing and Isolation
  3 Apr 2025 1 repository listed
  There has been interest in the interactions between infectious disease dynamics and behaviour for most of the history of mathematical epidemiology.
• Optimal virulence strategies in epidemiological models with asymptomatic transmission
  5 Mar 2025 1 repository listed
  We find that an increased proportion of cases moving through a ``mild recovery route" -- which can occur with different host susceptibility or increased public health intervention -- leads to a model structure in which…
• Advancing calibration for stochastic agent-based models in epidemiology with Stein variational inference and Gaussian process surrogates
  26 Feb 2025 1 repository listed
  Accurate calibration of stochastic agent-based models (ABMs) in epidemiology is crucial to make them useful in public health policy decisions and interventions.
• Filtered Markovian Projection: Dimensionality Reduction in Filtering for Stochastic Reaction Networks
  11 Feb 2025 1 repository listed
  Stochastic reaction networks (SRNs) model stochastic effects for various applications, including intracellular chemical or biological processes and epidemiology.
• Smooth Sailing: Lipschitz-Driven Uncertainty Quantification for Spatial Association
  9 Feb 2025 1 repository listed
  And we show that existing methods for constructing confidence (or credible) intervals for associations fail to provide nominal coverage in the face of model misspecification and distribution shift - despite both being…
• Synthetic Datasets for Machine Learning on Spatio-Temporal Graphs using PDEs
  6 Feb 2025 1 repository listed
  Further, we show how such created datasets can be used by benchmarking several machine learning models on the epidemiological dataset.
• Prediction of Lung Metastasis from Hepatocellular Carcinoma using the SEER Database
  20 Jan 2025 1 repository listed
  Despite the growing availability of clinical and demographic data, predictive models for lung metastasis in HCC remain limited in scope and clinical applicability.
• The impact of recovery rate heterogeneity in achieving herd immunity
  20 Nov 2024 1 repository listed
  Furthermore, we provide a theoretical result demonstrating that it is instead the mean recovery time, which is the mean of the inverse 1/γ of the recovery rate that is critical in deciding whether herd immunity is…
• Random walk models in the life sciences: including births, deaths and local interactions
  17 Nov 2024 1 repository listed
  This assumption simplifies the mathematical description of the population considerably, enabling continuum-limit descriptions to be derived and used in model analysis and fitting.
• TrajGPT: Controlled Synthetic Trajectory Generation Using a Multitask Transformer-Based Spatiotemporal Model
  7 Nov 2024 1 repository listed Syntology ran 2 of 2 samples · 0 unverified · 2 pointer-only (licence)
  TrajGPT integrates the spatial and temporal models in a transformer architecture through a Bayesian probability model that ensures that the gaps in a visit sequence are filled in a spatiotemporally consistent manner.
• Compositional simulation-based inference for time series
  5 Nov 2024 1 repository listed Syntology ran 0 of 1 samples · 1 unverified · 1 pointer-only (licence)
  Amortized simulation-based inference (SBI) methods train neural networks on simulated data to perform Bayesian inference.
• Stability in Reaction Network Models via an Extension of the Next Generation Matrix Method
  3 Nov 2024 1 repository listed
  This important result seems to be little known outside of ME; even in ME, it has not been made clear before that the method gets sometimes the right answer, even though the conditions of the NGM theorem are not all…
• Interpreting Temporal Graph Neural Networks with Koopman Theory
  17 Oct 2024 1 repository listed
  The second relies on sparse identification of nonlinear dynamics (SINDy), a popular method for discovering governing equations, which we use for the first time as a general tool for explainability.
• When and Where Did it Happen? An Encoder-Decoder Model to Identify Scenario Context
  10 Oct 2024 1 repository listed
  We introduce a neural architecture finetuned for the task of scenario context generation: The relevant location and time of an event or entity mentioned in text.
• Cost-aware simulation-based inference
  10 Oct 2024 1 repository listed Syntology ran 5 of 5 samples · 0 unverified · 5 pointer-only (licence)
  Simulation-based inference (SBI) is the preferred framework for estimating parameters of intractable models in science and engineering.
• BACKTIME: Backdoor Attacks on Multivariate Time Series Forecasting
  3 Oct 2024 1 repository listed Syntology ran 5 of 8 samples · 3 unverified · 8 pointer-only (licence)
  Multivariate Time Series (MTS) forecasting is a fundamental task with numerous real-world applications, such as transportation, climate, and epidemiology.
• Epidemiology-Aware Neural ODE with Continuous Disease Transmission Graph
  28 Sep 2024 1 repository listed Syntology ran 1 of 1 samples · 0 unverified
  To accommodate both the global coherence of epidemic trends and the local nuances of epidemic transmission patterns, we build a cross-attention approach to fuse the most meaningful information for forecasting.
• SINDyG: Sparse Identification of Nonlinear Dynamical Systems from Graph-Structured Data
  2 Sep 2024 1 repository listed
  To address this issue, we developed a new method called Sparse Identification of Nonlinear Dynamical Systems from Graph-structured data (SINDyG), which incorporates the network structure into sparse regression to…

Syntology lines on 8 of the papers shown; no Syntology record for the others (a paper without an arXiv id cannot be joined to the graph, and absence from the graph layer is not a recorded non-run). “Ran” means the sample executed on a synthesized fixture, not that the paper's result was reproduced. Read from the graph 2026-09-24.