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Epidemiology

Papers archive 2025-07-28

archive papers tagged: 425 · with a code link: 106 · where Syntology ran a sample: 15 (11 with a run with no instrument failure, 4 where every run was a failure of Syntology's instrument) Syntology

Show: all tagged papersonly where code ran (15 of 425 tagged: 11 with a run with no instrument failure, 4 where every run was a failure of Syntology's instrument)

Page 3 of 5: papers 201 to 300 of 425, in archive order: by repositories listed in the archive (most first), then newest first, not by stars (the archive holds no stars, so PwC's “Social” and “Latest” sorts cannot be reproduced). Papers that list no repository come after every paper that lists one.

Papers without a page here are shown as plain text. A Syntology line reads “N ran (of which C constructed an object rather than computing a result; K with no instrument failure: H honoured, V violated, P with no contract checked; I where Syntology's instrument failed) · U unverified”; the figure “where Syntology's instrument failed” counts failures of Syntology's instrument, not of the code. When the archive marks a repository official for the paper, the line starts with that repository's state (the archive's flag, not a verdict on who wrote the code); hover it for the repositories the samples that ran came from. Abstracts are on each paper's page.

• Superinfection and the hypnozoite reservoir for Plasmodium vivax: a general framework
  25 Jun 2023 0 repositories listed
• A Causal Framework for Decomposing Spurious Variations
  8 Jun 2023 0 repositories listed
• A Markov chain model to investigate the spread of antibiotic-resistant bacteria in hospitals
  23 May 2023 0 repositories listed
• Bugs as Features (Part II): A Perspective on Enriching Microbiome-Gut-Brain Axis Analyses
  19 May 2023 0 repositories listed
• Ontology for Healthcare Artificial Intelligence Privacy in Brazil
  16 Apr 2023 0 repositories listed
• Epidemic Control on a Large-Scale-Agent-Based Epidemiology Model using Deep Deterministic Policy Gradient
  10 Apr 2023 0 repositories listed
• Learning interpretable causal networks from very large datasets, application to 400,000 medical records of breast cancer patients
  11 Mar 2023 0 repositories listed
• Efficient simulation of individual-based population models: the R Package IBMPopSim
  10 Mar 2023 0 repositories listed
• JUNE-Germany: An Agent-Based Epidemiology Simulation including Multiple Virus Strains, Vaccinations and Testing Campaigns
  10 Mar 2023 0 repositories listed
• New √(n)-consistent, numerically stable higher-order influence function estimators
  16 Feb 2023 0 repositories listed
• Simulation algorithms for Markovian and non-Markovian epidemics
  6 Feb 2023 0 repositories listed
• Bridging the Covid-19 Data and the Epidemiological Model using Time-Varying Parameter SIRD Model
  31 Jan 2023 0 repositories listed
• At the crossroads of epidemiology and biology: bridging the gap between SARS-CoV-2 viral strain properties and epidemic wave characteristics
  30 Jan 2023 0 repositories listed
• Geometric approach for non pharmaceutical interventions in epidemiology
  20 Jan 2023 0 repositories listed
• Optimality-preserving Reduction of Chemical Reaction Networks
  20 Jan 2023 0 repositories listed
• A spatio-temporal framework for modelling wastewater concentration during the COVID-19 pandemic
  18 Jan 2023 0 repositories listed
• Sensor data-driven analysis for identification of causal relationships between exposure to air pollution and respiratory rate in asthmatics
  16 Jan 2023 0 repositories listed
• Neural Network Augmented Compartmental Pandemic Models
  15 Dec 2022 0 repositories listed
• Fast Learning of Multidimensional Hawkes Processes via Frank-Wolfe
  12 Dec 2022 0 repositories listed
• GRASMOS: Graph Signage Model Selection for Gene Regulatory Networks
  17 Nov 2022 0 repositories listed
• Significant Ties Graph Neural Networks for Continuous-Time Temporal Networks Modeling
  12 Nov 2022 0 repositories listed
• Generalised Gillespie Algorithms for Simulations in a Rule-Based Epidemiological Model Framework
  17 Oct 2022 0 repositories listed
• What Are You Anxious About? Examining Subjects of Anxiety during the COVID-19 Pandemic
  27 Sep 2022 0 repositories listed
• A Survey on Large-Population Systems and Scalable Multi-Agent Reinforcement Learning
  8 Sep 2022 0 repositories listed
• Agent based simulators for epidemic modelling: Simulating larger models using smaller ones
  7 Sep 2022 0 repositories listed
• Data needs for integrated economic-epidemiological models of pandemic mitigation policies
  3 Sep 2022 0 repositories listed
• An agent-based modeling approach for real-world economic systems: Example and calibration with a Social Accounting Matrix of Spain
  28 Aug 2022 0 repositories listed
• A hybrid transmission model for Plasmodium vivax accounting for superinfection, immunity and the hypnozoite reservoir
  22 Aug 2022 0 repositories listed
• A Modified PINN Approach for Identifiable Compartmental Models in Epidemiology with Applications to COVID-19
  1 Aug 2022 0 repositories listed
• On the Need and Applicability of Causality for Fairness: A Unified Framework for AI Auditing and Legal Analysis
  8 Jul 2022 0 repositories listed
• Machine learning of percolation models using graph convolutional neural networks
  7 Jul 2022 0 repositories listed
• Eco-evolutionary tradeoffs in the dynamics of prion strain competition
  5 Jul 2022 0 repositories listed
• Spatiotemporal Data Mining: A Survey
  26 Jun 2022 0 repositories listed
• Stochastic compartmental models of COVID-19 pandemic must have temporally correlated uncertainties
  23 Jun 2022 0 repositories listed
• Moving towards FAIR practices in epidemiological research
  13 Jun 2022 0 repositories listed
• Innovations in Integrating Machine Learning and Agent-Based Modeling of Biomedical Systems
  2 Jun 2022 0 repositories listed
• Enriching Epidemiological Thematic Features For Disease Surveillance Corpora Classification
  1 Jun 2022 0 repositories listed
• Petri nets in epidemiology
  30 May 2022 0 repositories listed
• Generalization bounds and algorithms for estimating conditional average treatment effect of dosage
  29 May 2022 0 repositories listed
• Counterfactual Analysis in Dynamic Latent State Models
  27 May 2022 0 repositories listed
• Pneumococcus and the stress-gradient hypothesis: a trade-off links R₀ and susceptibility to co-colonization across countries
  25 May 2022 0 repositories listed
• Inference of a Rumor's Source in the Independent Cascade Model
  24 May 2022 0 repositories listed
• New results and open questions for SIR-PH epidemic models with linear birth rate, loss of immunity, vaccination, and disease and vaccination fatalities
  7 May 2022 0 repositories listed
• A machine learning-based severity prediction tool for diabetic sensorimotor polyneuropathy using Michigan neuropathy screening instrumentations
  28 Mar 2022 0 repositories listed
• Implications of Mortality Displacement for Effect Modification and Selection Bias
  26 Mar 2022 0 repositories listed
• Modeling-informed policy, policy evaluated by modeling: Evolution of mathematical epidemiology in the context of society and economy
  23 Mar 2022 0 repositories listed
• Controlling Epidemic Spread using Probabilistic Diffusion Models on Networks
  16 Feb 2022 0 repositories listed
• Behavioral epidemiology: An economic model to evaluate optimal policy in the midst of a pandemic
  8 Feb 2022 0 repositories listed
• Personalized Public Policy Analysis in Social Sciences using Causal-Graphical Normalizing Flows
  7 Feb 2022 0 repositories listed
• Spread of variants of epidemic disease based on the microscopic numerical simulations on networks
  28 Dec 2021 0 repositories listed
• PEACH Tree: A Multiple Sequence Alignment and Tree Display Tool for Epidemiologists
  12 Dec 2021 0 repositories listed
• Compartmental and cellular automaton SEIRS epidemiology models for the COVID-19 pandemic with the effects of temporal immunity and vaccination
  5 Dec 2021 0 repositories listed
• SNPs Filtered by Allele Frequency Improve the Prediction of Hypertension Subtypes
  19 Nov 2021 0 repositories listed
• The network epidemiology of an Ebola epidemic
  16 Nov 2021 0 repositories listed
• A Rule-Based Epidemiological Modelling Framework
  14 Nov 2021 0 repositories listed
• Global and local epidemiology of Group A Streptococcus indicates that naturally-acquired immunity is enduring and strain-specific
  11 Nov 2021 0 repositories listed
• Effective Resistance for Pandemics: Mobility Network Sparsification for High-Fidelity Epidemic Simulation
  3 Nov 2021 0 repositories listed
• A review of commonly used compartmental models in epidemiology
  18 Oct 2021 0 repositories listed
• Scalable Causal Structure Learning: Scoping Review of Traditional and Deep Learning Algorithms and New Opportunities in Biomedicine
  15 Oct 2021 0 repositories listed
• Modeling complex systems: A case study of compartmental models in epidemiology
  6 Oct 2021 0 repositories listed
• Reformulating the SIR model in terms of the number of COVID-19 detected cases: well-posedness of the observational model
  1 Oct 2021 0 repositories listed
• The evolutionary epidemiology of pathogens during vaccination campaigns
  28 Sep 2021 0 repositories listed
• A survey of Bayesian Network structure learning
  23 Sep 2021 0 repositories listed
• Temporal Scale Estimation for Oversampled Network Cascades: Theory, Algorithms, and Experiment
  22 Sep 2021 0 repositories listed
• An AI-assisted Economic Model of Endogenous Mobility and Infectious Diseases: The Case of COVID-19 in the United States
  21 Sep 2021 0 repositories listed
• Nonsmooth convex optimization to estimate the Covid-19 reproduction number space-time evolution with robustness against low quality data
  20 Sep 2021 0 repositories listed
• Sliding-mode theory under feedback constraints and the problem of epidemic control
  12 Sep 2021 0 repositories listed
• Estimating Categorical Counterfactuals via Deep Twin Networks
  4 Sep 2021 0 repositories listed
• Multilingual Epidemic Event Extraction : From Simple Classification Methods to Open Information Extraction (OIE) and Ontology
  1 Sep 2021 0 repositories listed
• Combining COVID-19 Vaccination with Social Distancing Measures
  16 Aug 2021 0 repositories listed
• Spatio-temporal Parking Behaviour Forecasting and Analysis Before and During COVID-19
  15 Aug 2021 0 repositories listed
• Evidence Aggregation for Treatment Choice
  14 Aug 2021 0 repositories listed
• Individual Survival Curves with Conditional Normalizing Flows
  27 Jul 2021 0 repositories listed
• Fiber decomposition of deterministic reaction networks with applications
  18 Jul 2021 0 repositories listed
• The Multi-phase spatial meta-heuristic algorithm for public health emergency transportation
  5 Jul 2021 0 repositories listed
• An activation-clearance model for Plasmodium vivax malaria
  24 Jun 2021 0 repositories listed
• Mining Interpretable Spatio-temporal Logic Properties for Spatially Distributed Systems
  16 Jun 2021 0 repositories listed
• A review of matrix SIR Arino epidemic models
  1 Jun 2021 0 repositories listed
• A Mathematical Model of COVID-19 Transmission
  25 May 2021 0 repositories listed
• Probing the Effect of Selection Bias on Generalization: A Thought Experiment
  20 May 2021 0 repositories listed
• Data Assimilation Predictive GAN (DA-PredGAN): applied to determine the spread of COVID-19
  17 May 2021 0 repositories listed
• Hard Encoding of Physics for Learning Spatiotemporal Dynamics
  2 May 2021 0 repositories listed
• Modeling the COVID-19 pandemic: A primer and overview of mathematical epidemiology
  16 Apr 2021 0 repositories listed
• Prediction of Prognosis and Survival of Patients with Gastric Cancer by Weighted Improved Random Forest Model
  10 Apr 2021 0 repositories listed
• Data-driven deep learning algorithms for time-varying infection rates of COVID-19 and mitigation measures
  5 Apr 2021 0 repositories listed
• Defining the lead time of wastewater-based epidemiology for COVID-19
  1 Apr 2021 0 repositories listed
• Impact of climate change on West Nile virus distribution in South America
  1 Apr 2021 0 repositories listed
• MOAI: A methodology for evaluating the impact of indoor airflow in the transmission of COVID-19
  31 Mar 2021 0 repositories listed
• Spatiotemporal Data Mining: A Survey on Challenges and Open Problems
  31 Mar 2021 0 repositories listed
• Multi-Source Causal Inference Using Control Variates
  30 Mar 2021 0 repositories listed
• Use of mathematical modelling to assess respiratory syncytial virus epidemiology and interventions: A literature review
  23 Mar 2021 0 repositories listed
• Data-Driven Methods for Present and Future Pandemics: Monitoring, Modelling and Managing
  25 Feb 2021 0 repositories listed
• Exact epidemic models from a tensor product formulation
  23 Feb 2021 0 repositories listed
• Learning Epidemiology by Doing: The Empirical Implications of a Spatial-SIR Model with Behavioral Responses
  19 Feb 2021 0 repositories listed
• The EpiBench Platform to Propel AI/ML-based Epidemic Forecasting: A Prototype Demonstration Reaching Human Expert-level Performance
  4 Feb 2021 0 repositories listed
• The field theoretical ABC of epidemic dynamics
  25 Jan 2021 0 repositories listed
• Pareto GAN: Extending the Representational Power of GANs to Heavy-Tailed Distributions
  22 Jan 2021 0 repositories listed
• A deep learning modeling framework to capture mixing patterns in reactive-transport systems
  11 Jan 2021 0 repositories listed
• Deep Learning applications for COVID-19
  11 Jan 2021 0 repositories listed
• Diagnosis/Prognosis of COVID-19 Images: Challenges, Opportunities, and Applications
  28 Dec 2020 0 repositories listed