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MIMIC-III (The Medical Information Mart for Intensive Care III)

Introduced by Alistair E.W. Johnson et al. in MIMIC-III, a freely accessible critical care database24 May 2016 archive 2025-07-28

The Medical Information Mart for Intensive Care III (MIMIC-III) dataset is a large, de-identified and publicly-available collection of medical records. Each record in the dataset includes ICD-9 codes, which identify diagnoses and procedures performed. Each code is partitioned into sub-codes, which often include specific circumstantial details. The dataset consists of 112,000 clinical reports records (average length 709.3 tokens) and 1,159 top-level ICD-9 codes. Each report is assigned to 7.6 codes, on average. Data includes vital signs, medications, laboratory measurements, observations and notes charted by care providers, fluid balance, procedure codes, diagnostic codes, imaging reports, hospital length of stay, survival data, and more.

The database supports applications including academic and industrial research, quality improvement initiatives, and higher education coursework.

Source: MIT Laboratory for Computational Biology

HomepageBenchmarksPapers JSON

Benchmarks archive 2025-07-28

All 8 leaderboards whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.

First row (archive order)PaperCode
Medical Code Prediction MIMIC-III GKI-ICD Micro-F1 61.2 A General Knowledge Injection Framework for ICD Coding xuzhang0112/GKI-ICD 18 Compare
Mortality Prediction MIMIC-III Random Forest F1 score 0.97 Early hospital mortality prediction using vital signals RezaSadeghiWSU/Early-Hospital-Mortality-Prediction-using-Vital-Signals 13 Compare
Length-of-Stay prediction MIMIC-III EHR-Graph Transformer (pre-trained) Accuracy (LOS>3 Days) 71.4% Unsupervised Pre-Training on Patient Population Graphs... chantalmp/unsupervised_pre-training_of_graph_transformers_on_patient_population_graphs +1 5 Compare
Multivariate Time Series Forecasting MIMIC-III GraFITi MSE 0.396 ± 0.030 Forecasting Irregularly Sampled Time Series using Graphs yalavarthivk/GraFITi 5 Compare
Blood pressure estimation MIMIC-III Deep RNN MAE for SBP [mmHg] 8.54 Long-term Blood Pressure Prediction with Deep Recurrent... psu1/DeepRNN +1 4 Compare
Multi-Label Text Classification MIMIC-III HLAN AUC 0.919 Explainable Automated Coding of Clinical Notes using... acadTags/Explainable-Automated-Medical-Coding +1 3 Compare
Multi-Label Classification Of Biomedical Texts MIMIC-III Convolutional Neural Network with per-label Attention Micro F1 0.537 Predicting Multiple ICD-10 Codes from... 3778/icd-prediction-mimic 1 Compare
Multi-Label Classification Of Biomedical Texts MIMIC-III Similarity 1:3 Accuracy 95 MIMIC-III, a freely accessible critical care database MIT-LCP/mimic-code +1 1 Compare

Papers archive 2025-07-28

26 shown of 26 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 1,041. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.

DateSamples run Syntology
A General Knowledge Injection Framework for ICD Coding 1 1 24 May 2025 not harvested
Domain Knowledge Integrated CNN-xLSTM-xAtt Network with Multi Stream Feature Fusion for Cuffless Blood Pressure Estimation from Photoplethysmography Signals 1 1 13 May 2025 not harvested
An Unsupervised Approach to Achieve Supervised-Level Explainability in Healthcare Records 2 1 13 Jun 2024 not harvested
Functional Latent Dynamics for Irregularly Sampled Time Series Forecasting 1 1 6 May 2024 not harvested
Forecasting Irregularly Sampled Time Series using Graphs 1 1 22 May 2023 not harvested
Knowledge Injected Prompt Based Fine-tuning for Multi-label Few-shot ICD Coding 1 1 7 Oct 2022 ran 2 of 2 samples (0 unverified)
Automatic ICD Coding Exploiting Discourse Structure and Reconciled Code Embeddings 1 1 1 Oct 2022 not harvested
Unsupervised Pre-Training on Patient Population Graphs for Patient-Level Predictions 2 2 23 Mar 2022 not harvested
Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding 1 1 3 Mar 2022 not harvested
Effective Convolutional Attention Network for Multi-label Clinical Document Classification 0 1 1 Nov 2021 not harvested
Neural Flows: Efficient Alternative to Neural ODEs 1 1 25 Oct 2021 not harvested
Read, Attend, and Code: Pushing the Limits of Medical Codes Prediction from Clinical Notes by Machines 0 1 10 Jul 2021 not harvested
MeDAL: Medical Abbreviation Disambiguation Dataset for Natural Language Understanding Pretraining 1 5 27 Dec 2020 not harvested
Explainable Automated Coding of Clinical Notes using Hierarchical Label-wise Attention Networks and Label Embedding Initialisation 2 3 29 Oct 2020 not harvested
Predicting Multiple ICD-10 Codes from Brazilian-Portuguese Clinical Notes 1 1 29 Jul 2020 not harvested
A Label Attention Model for ICD Coding from Clinical Text 2 2 13 Jul 2020 ran 2 of 5 samples (3 unverified; 1 pointer-only for licence)
ICD Coding from Clinical Text Using Multi-Filter Residual Convolutional Neural Network 3 1 25 Nov 2019 ran 0 of 1 samples (1 unverified)
Blood Pressure Estimation from Photoplethysmogram Using a Spectro-Temporal Deep Neural Network 0 1 4 Aug 2019 not harvested
MIMIC-Extract: A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III 2 3 19 Jul 2019 ran 1 of 1 samples (0 unverified)
GRU-ODE-Bayes: Continuous modeling of sporadically-observed time series 3 1 29 May 2019 ran 2 of 2 samples (0 unverified)
Early hospital mortality prediction using vital signals 1 8 18 Mar 2018 not harvested
Explainable Prediction of Medical Codes from Clinical Text 3 6 15 Feb 2018 ran 1 of 1 samples (0 unverified)
An Empirical Evaluation of Deep Learning for ICD-9 Code Assignment using MIMIC-III Clinical Notes 1 1 7 Feb 2018 not harvested
Patient Subtyping via Time-Aware LSTM Networks 1 1 13 Aug 2017 not harvested
Long-term Blood Pressure Prediction with Deep Recurrent Neural Networks 2 1 12 May 2017 not harvested
MIMIC-III, a freely accessible critical care database 2 1 24 May 2016 not harvested

Dataset loaders archive 2025-07-28

moustafa100/Data-Science-Advanced-Analyticstf

1 loader as listed in the archive; links are outbound and not re-checked here.

Tasks archive 2025-07-28

Multivariate Time Series ForecastingBlood pressure estimationMulti-Label Text ClassificationMedical Code PredictionMortality PredictionLength-of-Stay predictionMulti-Label Classification Of Biomedical Texts

License archive 2025-07-28

MIT

Modalities archive 2025-07-28

MedicalTabular

Languages archive 2025-07-28

English

Variants archive 2025-07-28

  • MIMIC-III

1 variant name, as the archive lists them.

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