Datasets › HT1080WT cells - 3D collagen type I matrices

HT1080WT cells - 3D collagen type I matrices (HT1080WT cells embedded in 3D collagen type I matrices - manual annotations for cell instance segmentation and tracking)

Introduced by Estibaliz Gómez-de-Mariscal et al. in Search for temporal cell segmentation robustness in phase-contrast microscopy videos16 Dec 2021 archive 2025-07-28

Human fibrosarcoma HT1080WT (ATCC) cells at low cell densities embedded in 3D collagen type I matrices [1]. The time-lapse videos were recorded every 2 minutes for 16.7 hours and covered a field of view of 1002 pixels × 1004 pixels with a pixel size of 0.802 μm/pixel The videos were pre-processed to correct frame-to-frame drift artifacts, resulting in a final size of 983 pixels × 985 pixels pixels.

[1] Hasini Jayatilaka, Anjil Giri, Michelle Karl, Ivie Aifuwa, Nicholaus J Trenton, Jude M Phillip, Shyam Khatau, and Denis Wirtz. EB1 and cytoplasmic dynein mediate protrusion dynamics for efficient 3-dimensional cell migration. FASEB J., 32(3):1207–1221, 2018. ISSN 0892-6638. doi: 10.1096/fj.201700444RR.

Benchmarks archive 2025-07-28

No leaderboard in the archive resolves to this dataset.

Papers archive 2025-07-28

No paper in the archive has a leaderboard row on this dataset; the archive counts 1 paper for it but never published that list.

Dataset loaders archive 2025-07-28

No loader listed in the archive.

Tasks archive 2025-07-28

License archive 2025-07-28

Creative Commons Attribution 4.0 International

Modalities archive 2025-07-28

Languages archive 2025-07-28

Variants archive 2025-07-28

  • HT1080WT cells - 3D collagen type I matrices

1 variant name, as the archive lists them.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections