{"url":"/dataset/ht1080wt-cells-3d-collagen-type-i-matrices","name":"HT1080WT cells - 3D collagen type I matrices","full_name":"HT1080WT cells embedded in 3D collagen type I matrices - manual annotations for cell instance segmentation and tracking","description_markdown":"Human fibrosarcoma HT1080WT (ATCC) cells at low cell densities embedded in 3D collagen type I matrices [1]. The time-lapse videos were recorded every 2 minutes for 16.7 hours and covered a field of view of 1002 pixels × 1004 pixels with a pixel size of 0.802 μm/pixel The videos were pre-processed to correct frame-to-frame drift artifacts, resulting in a final size of 983 pixels × 985 pixels pixels.\n\n[1] Hasini Jayatilaka, Anjil Giri, Michelle Karl, Ivie Aifuwa, Nicholaus J Trenton, Jude M Phillip, Shyam Khatau, and Denis Wirtz. EB1 and cytoplasmic dynein mediate protrusion dynamics for efficient 3-dimensional cell migration. FASEB J., 32(3):1207–1221, 2018. ISSN 0892-6638. doi: 10.1096/fj.201700444RR.","description_withheld":null,"homepage":"https://zenodo.org/record/5777994","introduced_date":"2021-12-16","introduced_date_note":null,"introduced_by":{"paper":"/paper/search-for-temporal-cell-segmentation","title":"Search for temporal cell segmentation robustness in phase-contrast microscopy videos","first_author":"Estibaliz Gómez-de-Mariscal","url":null},"license":{"name":"Creative Commons Attribution 4.0 International","url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"modalities":[{"name":"Videos","url":"/datasets/modality/videos"},{"name":"Medical","url":"/datasets/modality/medical"}],"tasks":[{"name":"Instance Segmentation","url":"/task/instance-segmentation","datasets_with_task":"/datasets/task/instance-segmentation"},{"name":"Object Tracking","url":"/task/object-tracking","datasets_with_task":"/datasets/task/object-tracking"}],"languages":[{"name":"English","url":"/datasets/language/english"}],"variants":["HT1080WT cells - 3D collagen type I matrices"],"data_loaders":[],"num_papers_in_archive":1,"source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28"},"benchmarks":[],"papers_with_a_benchmark_row":[],"syntology_totals":{"read_at":"2026-09-24T18:15:14+00:00","papers_with_samples":0,"samples_harvested":0,"samples_ran":0,"samples_unverified":0,"pointer_only_for_licence":0,"papers_with_no_sample_that_ran":0,"note":"the per-paper counts above, summed; not a rate"},"papers_note":"The archive never published its papers-using-dataset list; these are papers with a leaderboard row on this dataset's benchmarks."}