Datasets › BC5CDR › Papers where code ran, page 1

BC5CDR (BioCreative V CDR corpus)

Papers archive 2025-07-28

papers with a benchmark row: 22 · with a code link: 22 · where Syntology ran a sample: 7 (7 with a run with no instrument failure, 0 where every run was a failure of Syntology's instrument) Syntology

Show: all papers with a benchmark rowonly where code ran (7 of 22 with a benchmark row: 7 with a run with no instrument failure, 0 where every run was a failure of Syntology's instrument)

Syntology We ran code from the paper's repository; we did not run it on this dataset or check it against this dataset's benchmarks.

Page 1 of 1: papers 1 to 7 of the 7 papers with a benchmark row here where Syntology ran at least one harvested sample (7 with a run with no instrument failure, 0 where every run was a failure of Syntology's instrument), newest first by the archive's date (ties by arXiv id). This is a filter on Syntology's record ordered by date only, not a ranking; a run is not a correctness claim. A paper missing from this list is not a recorded non-run: it may have no arXiv id, no harvested code, or only samples that have not run yet.

The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset, not that list; the archive's count for this dataset is 191. The Syntology column is from Syntology's graph, stated per sample; it is not part of any archive number. A line reads “N ran (of which C constructed an object rather than computing a result; K with no instrument failure: H honoured, V violated, P with no contract checked; I where Syntology's instrument failed) · U unverified” (C is a part of N, never taken away from it); the figure “where Syntology's instrument failed” counts failures of Syntology's instrument, not of the code. “Ran” means the sample executed on a synthesized fixture, not that the paper's result was reproduced. When the archive marks a repository official for the paper, the cell starts with that repository's state (the archive's flag, not a verdict on who wrote the code; “community repositories only” when every sample that ran came from a community repository, “official: no sample here; runs from other or unrecorded repositories” when some came from a repository the paper names or has in its text, or from none recorded); hover it for the repositories the samples that ran came from. Syntology's record for this page has not changed since , the first build that kept a record date for it; when this build read Syntology's graph is in the build record.

PaperCodeResultsDateSamples run Syntology
GoLLIE: Annotation Guidelines improve Zero-Shot Information-Extraction 1 1 5 Oct 2023 official (archive's flag): 18 ran · 18 ran (of which 2 constructed an object rather than computing a result; 17 with no instrument failure: 0 honoured, 0 violated, 17 with no contract checked; 1 where Syntology's instrument failed) · 7 unverified
UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition 2 1 7 Aug 2023 8 ran (of which 0 constructed an object rather than computing a result; 6 with no instrument failure: 0 honoured, 1 violated, 5 with no contract checked; 2 where Syntology's instrument failed) · 4 unverified (3 pointer-only for licence)
Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learning 1 1 30 Aug 2022 official (archive's flag): 4 ran · 4 ran (of which 0 constructed an object rather than computing a result; 1 with no instrument failure: 1 honoured, 0 violated, 0 with no contract checked; 3 where Syntology's instrument failed) · 0 unverified
LinkBERT: Pretraining Language Models with Document Links 1 3 29 Mar 2022 official: harvested, nothing ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 11 unverified
SciFive: a text-to-text transformer model for biomedical literature 1 2 28 May 2021 official (archive's flag): 5 ran · 5 ran (of which 0 constructed an object rather than computing a result; 5 with no instrument failure: 0 honoured, 0 violated, 5 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified
Improving Named Entity Recognition by External Context Retrieving and Cooperative Learning 3 1 8 May 2021 official (archive's flag): 4 ran · 4 ran (of which 0 constructed an object rather than computing a result; 4 with no instrument failure: 0 honoured, 0 violated, 4 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets 4 2 13 Jun 2019 community repositories only · 2 ran (of which 0 constructed an object rather than computing a result; 2 with no instrument failure: 0 honoured, 0 violated, 2 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified