Prognosis

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Most implemented papers archive 2025-07-28

30 shown of 241 papers with code (900 tagged with this task in all), ordered by repositories listed in the archive, not by stars (the archive holds no stars, so PwC's “Social” and “Latest” sorts cannot be reproduced). Papers without a page here are shown as plain text.

• FALFormer: Feature-aware Landmarks self-attention for Whole-slide Image Classification
  10 Jul 2024 5 repositories listed
  Herein, we propose an efficient and effective slide-level classification model, named as FALFormer, that can process a WSI as a whole so as to fully exploit the relationship among the entire patches and to improve the…
• AeroPath: An airway segmentation benchmark dataset with challenging pathology
  2 Nov 2023 4 repositories listed
  In this study, we introduce a new public benchmark dataset (AeroPath), consisting of 27 CT images from patients with pathologies ranging from emphysema to large tumors, with corresponding trachea and bronchi annotations.
• Hierarchical Graph Representations in Digital Pathology
  22 Feb 2021 4 repositories listed
  We propose a novel multi-level hierarchical entity-graph representation of tissue specimens to model hierarchical compositions that encode histological entities as well as their intra- and inter-entity level…
• BLS-GAN: A Deep Layer Separation Framework for Eliminating Bone Overlap in Conventional Radiographs
  11 Sep 2024 3 repositories listed Syntology ran 3 of 3 samples · 0 unverified · 3 pointer-only (licence)
  This work initiated the study of a challenging scenario - bone layer separation in conventional radiographs, in which separate overlapped bone regions enable the independent assessment of the bone characteristics of…
• Preoperative brain tumor imaging: models and software for segmentation and standardized reporting
  29 Apr 2022 3 repositories listed
  Tumor segmentation models were trained using the AGU-Net architecture with different preprocessing steps and protocols.
• SMU-Net: Style matching U-Net for brain tumor segmentation with missing modalities
  6 Apr 2022 3 repositories listed
  Gliomas are one of the most prevalent types of primary brain tumours, accounting for more than 30\% of all cases and they develop from the glial stem or progenitor cells.
• COVIDx-US -- An open-access benchmark dataset of ultrasound imaging data for AI-driven COVID-19 analytics
  18 Mar 2021 3 repositories listed
  The COVID-19 pandemic continues to have a devastating effect on the health and well-being of the global population.
• Cutting-edge 3D Medical Image Segmentation Methods in 2020: Are Happy Families All Alike?
  1 Jan 2021 3 repositories listed
  Segmentation is one of the most important and popular tasks in medical image analysis, which plays a critical role in disease diagnosis, surgical planning, and prognosis evaluation.
• Vox2Vox: 3D-GAN for Brain Tumour Segmentation
  19 Mar 2020 3 repositories listed
  Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histological sub-regions, i.
• D-UNet: a dimension-fusion U shape network for chronic stroke lesion segmentation
  14 Aug 2019 3 repositories listed
  This function adds a weighted focal coefficient and combines two traditional loss functions.
• Estimating Missing Data in Temporal Data Streams Using Multi-directional Recurrent Neural Networks
  23 Nov 2017 3 repositories listed
  Existing methods address this estimation problem by interpolating within data streams or imputing across data streams (both of which ignore important information) or ignoring the temporal aspect of the data and imposing…
• Revisiting End-to-End Learning with Slide-level Supervision in Computational Pathology
  3 Jun 2025 2 repositories listed Syntology ran 6 of 9 samples · 3 unverified · 9 pointer-only (licence)
  In this paper, we pioneer the elucidation of optimization challenge caused by sparse-attention MIL and propose a novel MIL called ABMILX.
• Magnetic Resonance Imaging Feature-Based Subtyping and Model Ensemble for Enhanced Brain Tumor Segmentation
  5 Dec 2024 2 repositories listed
  Additionally, an open-source web-application is accessible at https://segmenter.
• Multimodal Whole Slide Foundation Model for Pathology
  29 Nov 2024 2 repositories listed Syntology ran 2 of 3 samples · 1 unverified · 3 pointer-only (licence)
  The field of computational pathology has been transformed with recent advances in foundation models that encode histopathology region-of-interests (ROIs) into versatile and transferable feature representations via…
• Unleashing the Power of Multi-Task Learning: A Comprehensive Survey Spanning Traditional, Deep, and Pretrained Foundation Model Eras
  29 Apr 2024 2 repositories listed
  Overall, we hope this survey provides the research community with a comprehensive overview of the advancements in MTL from its inception in 1997 to the present in 2023.
• A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge
  28 Mar 2024 2 repositories listed
  We address this gap by presenting a novel ensemble algorithm derived from the 2022 Ischemic Stroke Lesion Segmentation (ISLES) challenge.
• Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology
  27 Feb 2024 2 repositories listed Syntology ran 13 of 24 samples · 11 unverified · 24 pointer-only (licence)
  Unlike existing works that focus on pre-training powerful feature extractor or designing sophisticated instance aggregator, R²T is tailored to re-embed instance features online.
• AdaMSS: Adaptive Multi-Modality Segmentation-to-Survival Learning for Survival Outcome Prediction from PET/CT Images
  17 May 2023 2 repositories listed
  Instead of adopting MTL, we propose a novel Segmentation-to-Survival Learning (SSL) strategy, where our AdaMSS is trained for tumor segmentation and survival prediction sequentially in two stages.
• Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction
  13 Apr 2023 2 repositories listed Syntology ran 2 of 2 samples · 0 unverified · 2 pointer-only (licence)
  We propose fusing both modalities using a memory-efficient multimodal Transformer that can model interactions between pathway and histology patch tokens.
• Mesh Neural Networks for SE(3)-Equivariant Hemodynamics Estimation on the Artery Wall
  9 Dec 2022 2 repositories listed Syntology ran 3 of 8 samples · 5 unverified
  Computational fluid dynamics (CFD) is a valuable asset for patient-specific cardiovascular-disease diagnosis and prognosis, but its high computational demands hamper its adoption in practice.
• A Pragmatic Machine Learning Approach to Quantify Tumor Infiltrating Lymphocytes in Whole Slide Images
  14 Feb 2022 2 repositories listed
  Our approach is to transfer an open source machine learning method for segmentation and classification of nuclei in H&E slides trained on public data to TIL quantification without manual labeling of our data.
• CSAW-M: An Ordinal Classification Dataset for Benchmarking Mammographic Masking of Cancer
  2 Dec 2021 2 repositories listed
  Interval and large invasive breast cancers, which are associated with worse prognosis than other cancers, are usually detected at a late stage due to false negative assessments of screening mammograms.
• Universally Rank Consistent Ordinal Regression in Neural Networks
  14 Oct 2021 2 repositories listed
  Despite the pervasiveness of ordinal labels in supervised learning, it remains common practice in deep learning to treat such problems as categorical classification using the categorical cross entropy loss.
• Fast and Scalable Image Search For Histology
  28 Jul 2021 2 repositories listed
  Similar pathology image search offers the opportunity to comb through large historical repositories of gigapixel WSIs to identify cases with similar morphological features and can be particularly useful for diagnosing…
• The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification
  5 Jul 2021 2 repositories listed Syntology ran 2 of 2 samples · 0 unverified
  The BraTS 2021 challenge celebrates its 10th anniversary and is jointly organized by the Radiological Society of North America (RSNA), the American Society of Neuroradiology (ASNR), and the Medical Image Computing and…
• Stroke Lesion Segmentation with Visual Cortex Anatomy Alike Neural Nets
  13 May 2021 2 repositories listed
  Fast and precise stroke lesion detection and location is an extreme important process with regards to stroke diagnosis, treatment, and prognosis.
• CLIMAT: Clinically-Inspired Multi-Agent Transformers for Knee Osteoarthritis Trajectory Forecasting
  8 Apr 2021 2 repositories listed
  We show the effectiveness of our method in predicting the development of structural knee osteoarthritis changes over time.
• A Generalized Deep Learning Framework for Whole-Slide Image Segmentation and Analysis
  1 Jan 2020 2 repositories listed
  However, the size of images and variability in histopathology tasks makes it a challenge to develop an integrated framework for histopathology image analysis.
• Physics-informed neural networks for corrosion-fatigue prognosis
  22 Sep 2019 2 repositories listed
  The result is a cumulative damage model where the physics-informed layers are used to model the relatively well understood physics (crack growth through Paris law) and the data-driven layers account for the hard to…
• Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks
  16 May 2018 2 repositories listed
  The goal of this study was to develop a fully-automatic framework, robust to variability in both image parameters and clinical condition, for segmentation of the spinal cord and intramedullary MS lesions from…

Syntology lines on 7 of the papers shown; no Syntology record for the others (a paper without an arXiv id cannot be joined to the graph, and absence from the graph layer is not a recorded non-run). “Ran” means the sample executed on a synthesized fixture, not that the paper's result was reproduced. Read from the graph 2026-09-24.