Papers › PyPOTS: A Python Toolbox for Data Mining on Partially-Observed Time Series

PyPOTS: A Python Toolbox for Data Mining on Partially-Observed Time Series

30 May 2023arXiv:2305.18811archive 2025-07-28

Wenjie Du

PyPOTS is an open-source Python library dedicated to data mining and analysis on multivariate partially-observed time series, i.e. incomplete time series with missing values, A.K.A. irregularlysampled time series. Particularly, it provides easy access to diverse algorithms categorized into four tasks: imputation, classification, clustering, and forecasting. The included models contain probabilistic approaches as well as neural-network methods, with a well-designed and fully-documented programming interface for both academic researchers and industrial professionals to use. With robustness and scalability in its design philosophy, best practices of software construction, for example, unit testing, continuous integration (CI) and continuous delivery (CD), code coverage, maintainability evaluation, interactive tutorials, and parallelization, are carried out as principles during the development of PyPOTS. The toolkit is available on both Python Package Index (PyPI) and Anaconda. PyPOTS is open-source and publicly available on GitHub https://github.com/WenjieDu/PyPOTS.

PaperPDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2305.18811")

Code

Syntology Ran 0 of 21 code samples harvested from 2 repositories linked to this paper; 21 have no recorded run.

By repository: official repository: 21 samples from 2 repositories, 0 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

WenjieDu/PyPOTS officialmentioned in papermentioned on GitHubpytorch report
wenjiedu/brewpots officialmentioned in papermentioned on GitHubpytorchBSD-3-Clause report
WenjieDu/PyGrinder officialmentioned on GitHubpytorchBSD-3-Clause report
WenjieDu/TSDB officialmentioned on GitHubpytorchBSD-3-Clause report
wenjiedu/awesome_imputation officialpytorchBSD-3-Clause report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

21 samples harvested; 0 ran; 0 honoured the contract we drafted; 21 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

21unverified

Licence: 0 of the 21 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from 2 repositories linked to this paper, official or community; each sample names its own and says which. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

calc_missing_rate WenjieDu/PyGrinder/pygrinder/utils.py official repository unverified BSD-3-Clause (permissive) · c387775b4e946319 · report
fill_and_get_mask_numpy WenjieDu/PyGrinder/pygrinder/utils.py official repository unverified BSD-3-Clause (permissive) · be9c47491cf28500 · report
load_beijing_air_quality WenjieDu/TSDB/tsdb/loading_funcs/beijing_multisite_air_quality.py official repository unverified BSD-3-Clause (permissive) · 36bd8913a719f1c2 · report
load_electricity WenjieDu/TSDB/tsdb/loading_funcs/electricity_load_diagrams.py official repository unverified BSD-3-Clause (permissive) · 4c2d6549dc6192b6 · report
load_ett WenjieDu/TSDB/tsdb/loading_funcs/electricity_transformer_temperature.py official repository unverified BSD-3-Clause (permissive) · 70cbb47704b5ab59 · report
load_italy_air_quality WenjieDu/TSDB/tsdb/loading_funcs/italy_air_quality.py official repository unverified BSD-3-Clause (permissive) · 407ad127c5ac9922 · report
load_pems_traffic WenjieDu/TSDB/tsdb/loading_funcs/pems_traffic.py official repository unverified BSD-3-Clause (permissive) · 48ae4f71825e2b97 · report
load_physionet2012 WenjieDu/TSDB/tsdb/loading_funcs/physionet_2012.py official repository unverified BSD-3-Clause (permissive) · 48578be846b208a2 · report
load_physionet2019 WenjieDu/TSDB/tsdb/loading_funcs/physionet_2019.py official repository unverified BSD-3-Clause (permissive) · 17dc28cf1e81c1d5 · report
load_solar_alabama WenjieDu/TSDB/tsdb/loading_funcs/solar_alabama.py official repository unverified BSD-3-Clause (permissive) · 296f0ae78e1d6218 · report
load_tsqa WenjieDu/TSDB/tsdb/loading_funcs/tsqa.py official repository unverified BSD-3-Clause (permissive) · 8fd5c31a4a061aa0 · report
load_ucr_uea_dataset WenjieDu/TSDB/tsdb/loading_funcs/ucr_uea_datasets.py official repository unverified BSD-3-Clause (permissive) · 4661eb132334f7b3 · report
mar_logistic WenjieDu/PyGrinder/pygrinder/missing_at_random/mar_logistic.py official repository unverified BSD-3-Clause (permissive) · 0acbf327de305441 · report
masked_fill WenjieDu/PyGrinder/pygrinder/utils.py official repository unverified BSD-3-Clause (permissive) · f7e622c5263d482f · report
mcar WenjieDu/PyGrinder/pygrinder/missing_completely_at_random/mcar.py official repository unverified BSD-3-Clause (permissive) · fb4e5ad29f4f697b · report
mnar_nonuniform WenjieDu/PyGrinder/pygrinder/missing_not_at_random/mnar_nonuniform.py official repository unverified BSD-3-Clause (permissive) · 008e5ae15e11bf75 · report
mnar_t WenjieDu/PyGrinder/pygrinder/missing_not_at_random/mnar_t.py official repository unverified BSD-3-Clause (permissive) · 59291e54a11baca1 · report
mnar_x WenjieDu/PyGrinder/pygrinder/missing_not_at_random/mnar_x.py official repository unverified BSD-3-Clause (permissive) · febb233722fe951f · report
rdo WenjieDu/PyGrinder/pygrinder/randomly_drop_observations/rdo.py official repository unverified BSD-3-Clause (permissive) · 2435a99e193e1ccb · report
to_time_series WenjieDu/TSDB/tsdb/loading_funcs/ucr_uea_datasets.py official repository unverified BSD-3-Clause (permissive) · f0b7cb4933ae55df · report
ts_size WenjieDu/TSDB/tsdb/loading_funcs/ucr_uea_datasets.py official repository unverified BSD-3-Clause (permissive) · 5a2504beb4fe7332 · report

Tasks

Anomaly DetectionClassificationClassification on Time Series with Missing DataClusteringImputationIrregular Time SeriesMissing ValuesMultivariate Time Series ImputationPhilosophyTime SeriesTime Series AnalysisTime Series Anomaly DetectionTime Series ClassificationTime Series ClusteringTime Series ForecastingTraffic Data Imputation

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections