Papers › NESS: Node Embeddings from Static SubGraphs

NESS: Node Embeddings from Static SubGraphs

15 Mar 2023arXiv:2303.08958archive 2025-07-28

Talip Ucar

We present a framework for learning Node Embeddings from Static Subgraphs (NESS) using a graph autoencoder (GAE) in a transductive setting. NESS is based on two key ideas: i) Partitioning the training graph to multiple static, sparse subgraphs with non-overlapping edges using random edge split during data pre-processing, ii) Aggregating the node representations learned from each subgraph to obtain a joint representation of the graph at test time. Moreover, we propose an optional contrastive learning approach in transductive setting. We demonstrate that NESS gives a better node representation for link prediction tasks compared to current autoencoding methods that use either the whole graph or stochastic subgraphs. Our experiments also show that NESS improves the performance of a wide range of graph encoders and achieves state-of-the-art results for link prediction on multiple real-world datasets with edge homophily ratio ranging from strong heterophily to strong homophily.

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Code

AstraZeneca/NESS officialmentioned in papermentioned on GitHubpytorch report

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Tasks

Contrastive LearningGraph EmbeddingLink Prediction

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Link Prediction Citeseer NESS AP 99.5 #1 of 13 Archive leaderboard report
Link Prediction Citeseer NESS AUC 99.43 #1 of 13 Archive leaderboard report
Link Prediction Cora NESS AP 98.71% #1 of 13 Archive leaderboard report
Link Prediction Cora NESS AUC 98.46% #1 of 13 Archive leaderboard report
Link Prediction Pubmed NESS AP 96.52% #7 of 13 Archive leaderboard report
Link Prediction Pubmed NESS AUC 96.67% #7 of 13 Archive leaderboard report

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Methods

Contrastive LearningTest

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