Papers › Named Entity Recognition as Dependency Parsing

Named Entity Recognition as Dependency Parsing

14 May 2020ACL 2020 6arXiv:2005.07150archive 2025-07-28

Juntao Yu, Bernd Bohnet, Massimo Poesio

Named Entity Recognition (NER) is a fundamental task in Natural Language Processing, concerned with identifying spans of text expressing references to entities. NER research is often focused on flat entities only (flat NER), ignoring the fact that entity references can be nested, as in [Bank of [China]] (Finkel and Manning, 2009). In this paper, we use ideas from graph-based dependency parsing to provide our model a global view on the input via a biaffine model (Dozat and Manning, 2017). The biaffine model scores pairs of start and end tokens in a sentence which we use to explore all spans, so that the model is able to predict named entities accurately. We show that the model works well for both nested and flat NER through evaluation on 8 corpora and achieving SoTA performance on all of them, with accuracy gains of up to 2.2 percentage points.

PaperPDFConference PDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2005.07150")

Code

Syntology Ran 3 of 10 code samples harvested from 1 repository linked to this paper; 7 have no recorded run. Of those that ran: 1 ran · honoured contract; 2 ran · our draft was wrong.

By repository: official repository: 10 samples from 1 repository, 3 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

juntaoy/biaffine-ner officialmentioned in papertfApache-2.0 report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

10 samples harvested; 3 ran; 1 honoured the contract we drafted; 7 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

1ran · honoured contract
2ran · our draft was wrong
7unverified

Licence: 0 of the 10 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from juntaoy/biaffine-ner. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

flatten juntaoy/biaffine-ner/util.py official repository ran · honoured contract Apache-2.0 (permissive) · 20922c79a0929bbf · report
convert_to_unicode juntaoy/biaffine-ner/extract_bert_features/tokenization.py official repository ran · our draft was wrong fingerprinted Apache-2.0 (permissive) · 1923fc05163d207d · report
get_activation juntaoy/biaffine-ner/extract_bert_features/modeling.py official repository ran · our draft was wrong Apache-2.0 (permissive) · 2dc172f4dc0c745c · report
gelu juntaoy/biaffine-ner/extract_bert_features/modeling.py official repository unverified Apache-2.0 (permissive) · 6558b9f62bb65244 · report
get_assignment_map_from_checkpoint juntaoy/biaffine-ner/extract_bert_features/modeling.py official repository unverified Apache-2.0 (permissive) · 50958618b65e514e · report
input_fn_builder juntaoy/biaffine-ner/extract_bert_features/extract_features.py official repository unverified Apache-2.0 (permissive) · fb8d325e40dbff1b · report
load_vocab juntaoy/biaffine-ner/extract_bert_features/tokenization.py official repository unverified Apache-2.0 (permissive) · ff83ccc8b0b6462d · report
make_summary juntaoy/biaffine-ner/util.py official repository unverified Apache-2.0 (permissive) · 304ac22fbc54657a · report
mkdirs juntaoy/biaffine-ner/util.py official repository unverified Apache-2.0 (permissive) · e9675d534fa5b1ba · report
printable_text juntaoy/biaffine-ner/extract_bert_features/tokenization.py official repository unverified Apache-2.0 (permissive) · 0e5615f8994003cf · report

Tasks

Dependency ParsingNERNamed Entity RecognitionNamed Entity Recognition (NER)Nested Named Entity RecognitionSentencenamed-entity-recognition

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Named Entity Recognition (NER) ACE 2004 Biaffine-NER F1 86.7 #3 of 9 Archive leaderboard report
Named Entity Recognition (NER) ACE 2004 Biaffine-NER Multi-Task Supervision n #3 of 9 Archive leaderboard report
Named Entity Recognition (NER) ACE 2005 Biaffine-NER F1 85.4 #11 of 20 Archive leaderboard report
Named Entity Recognition (NER) CoNLL 2002 (Dutch) Biaffine-NER F1 93.7 #4 of 6 Archive leaderboard report
Named Entity Recognition (NER) CoNLL 2002 (Spanish) Biaffine-NER F1 90.3 #3 of 6 Archive leaderboard report
Named Entity Recognition (NER) CoNLL 2003 (English) Biaffine-NER F1 93.5 #19 of 73 Archive leaderboard report
Named Entity Recognition (NER) CoNLL 2003 (German) Biaffine-NER F1 86.4 #5 of 6 Archive leaderboard report
Named Entity Recognition (NER) CoNLL 2003 (German) Revised Biaffine-NER F1 90.3 #4 of 5 Archive leaderboard report
Named Entity Recognition (NER) GENIA Biaffine-NER F1 80.5 #2 of 14 Archive leaderboard report
Named Entity Recognition (NER) Ontonotes v5 (English) Biaffine-NER F1 91.3 #4 of 28 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections