Papers › A Probabilistic U-Net for Segmentation of Ambiguous Images

A Probabilistic U-Net for Segmentation of Ambiguous Images

13 Jun 2018NeurIPS 2018 12arXiv:1806.05034archive 2025-07-28

Simon A. A. Kohl, Bernardino Romera-Paredes, Clemens Meyer, Jeffrey De Fauw, Joseph R. Ledsam, Klaus H. Maier-Hein, S. M. Ali Eslami, Danilo Jimenez Rezende, Olaf Ronneberger

Many real-world vision problems suffer from inherent ambiguities. In clinical applications for example, it might not be clear from a CT scan alone which particular region is cancer tissue. Therefore a group of graders typically produces a set of diverse but plausible segmentations. We consider the task of learning a distribution over segmentations given an input. To this end we propose a generative segmentation model based on a combination of a U-Net with a conditional variational autoencoder that is capable of efficiently producing an unlimited number of plausible hypotheses. We show on a lung abnormalities segmentation task and on a Cityscapes segmentation task that our model reproduces the possible segmentation variants as well as the frequencies with which they occur, doing so significantly better than published approaches. These models could have a high impact in real-world applications, such as being used as clinical decision-making algorithms accounting for multiple plausible semantic segmentation hypotheses to provide possible diagnoses and recommend further actions to resolve the present ambiguities.

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Syntology Ran 5 of 9 code samples harvested from 4 repositories linked to this paper; 4 have no recorded run. Of those that ran: 2 ran · honoured contract; 1 ran · violated contract; 2 ran · our draft was wrong.

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SimonKohl/probabilistic_unet officialmentioned in papermentioned on GitHubtf report
MIC-DKFZ/probabilistic_unet mentioned on GitHubtfApache-2.0 report
Usman-Rafique/Probabilistic_UNet mentioned on GitHubpytorch report
cviviers/prob_3d_segmentation mentioned on GitHubpytorch report
jenspetersen/probabilistic-unet mentioned on GitHubpytorch report
kilgore92/Probabalistic-U-Net mentioned on GitHubpytorch report
stefanknegt/Probabilistic-Unet-Pytorch mentioned on GitHubpytorchApache-2.0 report
stefanknegt/probabilistic_unet_pytorch mentioned on GitHubpytorchApache-2.0 report

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2ran · honoured contract
1ran · violated contract
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get_array_of_modes MIC-DKFZ/probabilistic_unet/evaluation/eval_cityscapes.py community (archive-listed) ran · our draft was wrong Apache-2.0 (permissive) · 65cc4cdcce48e4cb · report
get_array_of_samples MIC-DKFZ/probabilistic_unet/evaluation/eval_cityscapes.py community (archive-listed) ran · honoured contract Apache-2.0 (permissive) · d600a3dd3ae5b79f · report
get_model cviviers/prob_3d_segmentation/pytorch3dunet/unet3d/model.py community (archive-listed) ran · our draft was wrong MIT (permissive) · 7c3bc634ea8906ac · report
is_conv jenspetersen/probabilistic-unet/probunet/model.py community (archive-listed) ran · violated contract MIT (permissive) · 0a5cbe60b0814cee · report
l2_regularisation stefanknegt/Probabilistic-Unet-Pytorch/utils.py community (archive-listed) ran · honoured contract Apache-2.0 (permissive) · c23b05634625d281 · report
ce_loss MIC-DKFZ/probabilistic_unet/utils/training_utils.py community (archive-listed) unverified Apache-2.0 (permissive) · 1154f612e91c9287 · report
get_mode_counts MIC-DKFZ/probabilistic_unet/evaluation/eval_cityscapes.py community (archive-listed) unverified Apache-2.0 (permissive) · 0621b823c2321b0f · report
numpy_one_hot MIC-DKFZ/probabilistic_unet/utils/training_utils.py community (archive-listed) unverified Apache-2.0 (permissive) · 73daa4c05abbf736 · report
softmax_2_onehot MIC-DKFZ/probabilistic_unet/utils/training_utils.py community (archive-listed) unverified Apache-2.0 (permissive) · 394d537f276d03c2 · report

Tasks

Decision MakingSegmentationSemantic Segmentation

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Methods

Concatenated Skip ConnectionConvolutionMax PoolingReLUU-Net

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