Datasets › Species-800
Species-800
Species-800 is a corpus for species entities, which is based on manually annotated abstracts. It comprises 800 PubMed abstracts that contain identified organism mentions. To increase the corpus taxonomic mention diversity the 800 abstracts were collected by selecting 100 abstracts from the following 8 categories: bacteriology, botany, entomology, medicine, mycology, protistology, virology and zoology. 800 has been annotated with a focus at the species level; however, higher taxa mentions (such as genera, families and orders) have also been considered.
Benchmarks archive 2025-07-28
All 1 leaderboard whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.
| First row (archive order) | Paper | Code | ||||
|---|---|---|---|---|---|---|
| Named Entity Recognition (NER) | Species-800 | BioBERT F1 75.31 | BioBERT: a pre-trained biomedical language... | dmis-lab/biobert +18 | 4 | Compare |
Papers archive 2025-07-28
4 shown of 4 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 5. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.
| Date | Samples run Syntology | |||
|---|---|---|---|---|
| SciFive: a text-to-text transformer model for biomedical literature | 1 | 1 | 28 May 2021 | ran 0 of 5 samples (5 unverified) |
| Improving Biomedical Named Entity Recognition with Syntactic Information | 1 | 1 | 25 Nov 2020 | not harvested |
| Biomedical Named Entity Recognition at Scale | 1 | 1 | 12 Nov 2020 | not harvested |
| BioBERT: a pre-trained biomedical language representation model for biomedical text mining | 19 | 1 | 25 Jan 2019 | ran 4 of 25 samples (21 unverified; 1 pointer-only for licence) |
Dataset loaders archive 2025-07-28
No loader listed in the archive.
Tasks archive 2025-07-28
License archive 2025-07-28
No licence recorded in the archive. Absence here is not a statement about the dataset's terms.
Modalities archive 2025-07-28
Languages archive 2025-07-28
No language tagged.
Variants archive 2025-07-28
- Species-800
1 variant name, as the archive lists them.
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