Datasets › Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications

Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications

Introduced in Computational reproducibility of Jupyter notebooks from biomedical publications11 Aug 2023 archive 2025-07-28

The dataset is generated from the study of computational reproducibility of Jupyter notebooks from biomedical publications. Our focus lies in evaluating the extent of reproducibility of Jupyter notebooks derived from GitHub repositories linked to publications present in the biomedical literature repository, PubMed Central. We analyzed the reproducibility of Jupyter notebooks from GitHub repositories associated with publications indexed in the biomedical literature repository PubMed Central. The dataset includes the metadata information of the journals, publications, the Github repositories mentioned in the publications and the notebooks present in the Github repositories.

Benchmarks archive 2025-07-28

No leaderboard in the archive resolves to this dataset.

Papers archive 2025-07-28

No paper in the archive has a leaderboard row on this dataset; the archive counts 1 paper for it but never published that list.

Dataset loaders archive 2025-07-28

No loader listed in the archive.

Tasks archive 2025-07-28

No task tagged in the archive.

License archive 2025-07-28

Creative Commons Attribution 4.0 International

Modalities archive 2025-07-28

Languages archive 2025-07-28

Variants archive 2025-07-28

  • Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications

1 variant name, as the archive lists them.

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