{"url":"/dataset/dataset-of-a-study-of-computational","name":"Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications","full_name":null,"description_markdown":"The dataset is generated from the study of computational reproducibility of Jupyter notebooks from biomedical publications. Our focus lies in evaluating the extent of reproducibility of Jupyter notebooks derived from GitHub repositories linked to publications present in the biomedical literature repository, PubMed Central. We analyzed the reproducibility of Jupyter notebooks from GitHub repositories associated with publications indexed in the biomedical literature repository PubMed Central. The dataset includes the metadata information of the journals, publications, the Github repositories mentioned in the publications and the notebooks present in the Github repositories.","description_withheld":null,"homepage":"https://zenodo.org/record/8226725","introduced_date":"2023-08-11","introduced_date_note":null,"introduced_by":{"paper":"/paper/computational-reproducibility-of-jupyter-1","title":"Computational reproducibility of Jupyter notebooks from biomedical publications","first_author":null,"url":null},"license":{"name":"Creative Commons Attribution 4.0 International","url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"modalities":[{"name":"Images","url":"/datasets/modality/images"},{"name":"Tabular","url":"/datasets/modality/tabular"},{"name":"Tables","url":"/datasets/modality/tables"}],"tasks":[],"languages":[{"name":"English","url":"/datasets/language/english"}],"variants":["Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications"],"data_loaders":[],"num_papers_in_archive":1,"source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28"},"benchmarks":[],"papers_with_a_benchmark_row":[],"syntology_totals":{"read_at":"2026-09-25T09:33:49+00:00","papers_with_samples":0,"samples_harvested":0,"samples_ran":0,"samples_unverified":0,"pointer_only_for_licence":0,"papers_with_no_sample_that_ran":0,"note":"the per-paper counts above, summed; not a rate"},"papers_note":"The archive never published its papers-using-dataset list; these are papers with a leaderboard row on this dataset's benchmarks."}