Datasets › A Dependency Graph for 460,000 Papers and Their Software Mentions from the CZI Software Mentions Dataset

A Dependency Graph for 460,000 Papers and Their Software Mentions from the CZI Software Mentions Dataset

Introduced in Biomedical Open Source Software: Crucial Packages and Hidden Heroes27 Oct 2023 archive 2025-07-28

Using the CZI Software Mentions Dataset and ecosyste.ms we create a graph of papers, their mentioned software, and recursive dependencies of each piece of software across 466,000 papers and three software registries (PyPI, CRAN, and BioConductor).

Benchmarks archive 2025-07-28

No leaderboard in the archive resolves to this dataset.

Papers archive 2025-07-28

No paper in the archive has a leaderboard row on this dataset; the archive counts 1 paper for it but never published that list.

Dataset loaders archive 2025-07-28

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Tasks archive 2025-07-28

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License archive 2025-07-28

CC-BY

Modalities archive 2025-07-28

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Languages archive 2025-07-28

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Variants archive 2025-07-28

  • A Dependency Graph for 460,000 Papers and Their Software Mentions from the CZI Software Mentions Dataset

1 variant name, as the archive lists them.

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