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run_command

Syntologyentry name in harvested coderead from the graph 2026-09-24

run_command appears in the code Syntology harvested for 61 papers, as 33 distinct code bodies found in 62 places (a place is one code body under one paper). At least one of them ran in 16 of the papers; 1 of the code bodies carries a behaviour fingerprint.

What this page is not. Routines are grouped here by the exact string of their function or class name. Nothing asserts that two samples named run_command do the same thing, share code, or are comparable; the name is a string, not an identity. Behaviour outputs (what a fingerprinted sample returned on the shared battery) are not in this export and are not shown here; the graph at syntology.ai holds them. "Ran" means executed on a synthesized fixture, not that the code is correct or reproduces a paper.

Samples Syntology

Syntology ran 11 of the 33 distinct code bodies named run_command; 22 are unverified. One tile per status, in the site's fixed vocabulary, each code body counted once:

1ran · honoured contract
1ran · violated contract
2ran · our draft was wrong
0ran · fixture could not drive it
7ran
22unverified
1fingerprinted

Licence is a property of each copy, so it is counted per place: 11 of the 62 places are pointer only (Syntology does not serve that copy's text). This site shows no code text for any sample; every row below links to the file in its repository where the record names one.

“Ran” means the sample executed on a synthesized input; it does not mean the output is correct. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code, and those samples did run. The ran count above is every status except unverified, the same rule as each paper page.

Papers

61 papers shown of 61, newest first; 62 places in the table. A paper with no recorded date is placed by the month its arXiv id encodes, shown in the Date column as YYYY-MM (from id). One row per place: a paper whose repository defines the name more than once appears more than once, and the same code body held for several papers appears once under each, with the same status. Titles and dates are the archive's archive 2025-07-28 for papers in the archive, and the graph's for 14 papers added by Syntology; 3 papers have no page here and are shown by arXiv id only. Status and fingerprint are Syntology's record of each code body; licence is recorded for each place. The File cell ends with the code body's code_sha256, Syntology's identity for that exact code: an agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

PaperDateFileStatus SyntologyLicence
Can LLMs Test Terminal User Interfaces? added by Syntology 2026-08 (from id) tui-testing/tuibot/src/tuibot/process.py f12b4c26b065495c ran MIT (permissive)
Matching Tasks to Objectives: Fine-Tuning and Prompt-Tuning Strategies for Encoder-Decoder Pre-trained Language Models added by Syntology 23 Jun 2026 puraminy/MTO/mto/eval_seq2seq.py 44e48dfbdecee3da ran · our draft was wrong fingerprinted MIT (permissive)
Understanding Latent Flow Models for Tabular Data Synthesis: Targets, Paths, and Sampling added by Syntology 2026-06 (from id) rulnasution/tabular-latent-flow/flow_run.py 2e47157170401c77 ran Apache-2.0 (permissive)
HyperEyes: Dual-Grained Efficiency-Aware Reinforcement Learning for Parallel Multimodal Search Agents added by Syntology 2026-05 (from id) DeepExperience/HyperEyes/RL/relax-hypereyes/Relax/versioneer.py 74de8bbc845a6717 ran no licence file found · pointer only
HyperEyes: Dual-Grained Efficiency-Aware Reinforcement Learning for Parallel Multimodal Search Agents added by Syntology 2026-05 (from id) DeepExperience/HyperEyes/RL/relax-hypereyes/Relax/relax/_version.py e36817d1c9cffe87 ran no licence file found · pointer only
CC-OCR v2: Fine-Grained Attribution of LMM Failures in Real-World Visual Document Understanding added by Syntology 2026-05 (from id) eioss/CC-OCR-V2/datasets_process/process_sibr.py 5a2559ab82d74b9c ran MIT (permissive)
CADFit: Precise Mesh-to-CAD Program Generation with Hybrid Optimization added by Syntology 2026-05 (from id) ghadinehme/CADFit/run_pipeline.py ccf01b31fb65fecc ran licence not identified · pointer only
Relax: An Asynchronous Reinforcement Learning Engine for Omni-Modal Post-Training at Scale added by Syntology 2026-04 (from id) redai-infra/Relax/relax/_version.py e36817d1c9cffe87 ran Apache-2.0 (permissive)
COVTrack++: Learning Open-Vocabulary Multi-Object Tracking from Continuous Videos via a Synergistic Paradigm added by Syntology 2026-03 (from id) zekunqian/covtrack/run_later.py 23d845075682b1e8 unverified Apache-2.0 (permissive)
Generative Replica-Exchange: A Flow-based Framework for Accelerating Replica Exchange Simulations added by Syntology 2026-03 (from id) Hhuangsj/GREX/Ala2/bgflow/_version.py 86d4ff45d6295e29 unverified no licence file found · pointer only
Identifying the Geographic Foci of US Local News added by Syntology 2026-03 (from id) shapely/shapely/src/shapely/_version.py dbb37355631dabcf unverified BSD-3-Clause (permissive)
Explanatory Interactive Machine Learning for Bias Mitigation in Visual Gender Classification added by Syntology 2026-02 (from id) fhstp/xil-gender-classification/explanatory_gender_classification/run_example.py ea63d8659109d801 unverified GPL-3.0 (copyleft) · pointer only
Grounding Generative Planners in Verifiable Logic: A Hybrid Architecture for Trustworthy Embodied AI added by Syntology 2026-02 (from id) Sn0wm1an/VIRF/agent_bench/run_batch_experiments.py 855925efeaf9678c unverified no licence file found · pointer only
Tracking and Understanding Object Transformations added by Syntology 2025-11 (from id) YihongSun/TubeletGraph/quick_run.py 019bd91fa532e60a unverified MIT (permissive)
Explaining and Mitigating Crosslingual Tokenizer Inequities added by Syntology 2025-10 (from id) catherinearnett/explaining_tokenizer_inequities/scripts/train_superbpe_tokenizers.py 7b93befc0632e7d5 ran · our draft was wrong MIT (permissive)
arXiv:2507.15290 2025-07 (from id) SarahLiaw/ctx-bandits-mcmc-showdown/run_experiments.py 1968be7cbb297e46 unverified MIT (permissive)
Consistent Sampling and Simulation: Molecular Dynamics with Energy-Based Diffusion Models 20 Jun 2025 noegroup/bgmol/bgmol/_version.py 86d4ff45d6295e29 unverified MIT (permissive)
Unable to Forget: Proactive lnterference Reveals Working Memory Limits in LLMs Beyond Context Length 9 Jun 2025 zhuangziGiantfish/Unable-to-Forget/automation/run_full_pipeline.py e4d97b219ca3432d unverified MIT (permissive)
RankLLM: A Python Package for Reranking with LLMs 25 May 2025 castorini/rank_llm/src/rank_llm/2cr/_base.py e0e20cb592f4dd2c unverified Apache-2.0 (permissive)
FEA-Bench: A Benchmark for Evaluating Repository-Level Code Generation for Feature Implementation 9 Mar 2025 microsoft/FEA-Bench/feabench/get_dataset.py ae38c85f79ffb235 unverified MIT (permissive)
A Cognac Shot To Forget Bad Memories: Corrective Unlearning for Graph Neural Networks 1 Dec 2024 cognac-gnn-unlearning/corrective-unlearning-for-gnns/run_cognac_best.py f7b12db3f3b994f5 ran · violated contract no licence file found · pointer only
Training-Free Adaptive Diffusion with Bounded Difference Approximation Strategy 13 Oct 2024 unimodal4reasoning/adaptivediffusion/benchmarks/run_all.py caf44b9a51fc258f ran Apache-2.0 (permissive)
LiveBench: A Challenging, Contamination-Limited LLM Benchmark 27 Jun 2024 livebench/livebench/livebench/run_livebench.py b6589d670b17d214 ran · honoured contract licence not identified · pointer only
PG-LBO: Enhancing High-Dimensional Bayesian Optimization with Pseudo-Label and Gaussian Process Guidance 28 Dec 2023 taicaichen/pg-lbo/utils/utils_cmd.py 7e54179509606534 unverified MIT (permissive)
Cousins Of The Vendi Score: A Family Of Similarity-Based Diversity Metrics For Science And Machine Learning 19 Oct 2023 vertaix/vendi-sampling/Molecular/reform/_version.py 86d4ff45d6295e29 unverified MIT (permissive)
Sensitivity of the IceCube Upgrade to Atmospheric Neutrino Oscillations 2023-07 (from id) icecube/pisa/pisa/_version.py e36817d1c9cffe87 ran Apache-2.0 (permissive)
SwiFT: Swin 4D fMRI Transformer 12 Jul 2023 Project-MONAI/MONAI/monai/_version.py dbb37355631dabcf unverified Apache-2.0 (permissive)
Exploring the Benefits of Training Expert Language Models over Instruction Tuning 7 Feb 2023 identical code first harvested elsewhere 44e48dfbdecee3da ran · our draft was wrong fingerprinted licence of this copy not recorded
Self-driving Multimodal Studies at User Facilities 2023-01 (from id) nsls-ii-pdf/mmm-experiments/mmm_experiments/_version.py 86d4ff45d6295e29 unverified BSD-3-Clause (permissive)
NVIDIA FLARE: Federated Learning from Simulation to Real-World 24 Oct 2022 NVIDIA/NVFlare/nvflare/_version.py fd630fd3407fdef7 unverified Apache-2.0 (permissive)
GraphNeT: Graph neural networks for neutrino telescope event reconstruction 21 Oct 2022 graphnet-team/graphnet/src/graphnet/_version.py 5ceaf6d580b6beef unverified Apache-2.0 (permissive)
On the Optimal Linear Contraction Order of Tree Tensor Networks, and Beyond 2022-09 (from id) stoianmihail/netzwerk/src/netzwerk/_version.py dbb37355631dabcf unverified MIT (permissive)
Roughness of molecular property landscapes and its impact on modellability 19 Jul 2022 coleygroup/rogi/src/rogi/_version.py dbb37355631dabcf unverified MIT (permissive)
EXODUS: Stable and Efficient Training of Spiking Neural Networks 20 May 2022 synsense/sinabs-exodus/sinabs/exodus/_version.py dbb37355631dabcf unverified Apache-2.0 (permissive)
Uncertainty-Informed Deep Learning Models Enable High-Confidence Predictions for Digital Histopathology 9 Apr 2022 jamesdolezal/slideflow/slideflow/_version.py dbb37355631dabcf unverified Apache-2.0 (permissive)
Bayesian optimization with known experimental and design constraints for chemistry applications 29 Mar 2022 aspuru-guzik-group/gryffin/src/gryffin/_version.py 86d4ff45d6295e29 unverified Apache-2.0 (permissive)
HuSpaCy: an industrial-strength Hungarian natural language processing toolkit 6 Jan 2022 huspacy/huspacy/huspacy/huspacy/utils.py 3b88d3f32fe70ecc unverified Apache-2.0 (permissive)
Accelerating Training and Inference of Graph Neural Networks with Fast Sampling and Pipelining 16 Oct 2021 mitibmxgraph/salient_artifact/experiments/configure_for_environment.py 4ae8a2b8375d5c18 unverified Apache-2.0 (permissive)
Learning C to x86 Translation: An Experiment in Neural Compilation 17 Aug 2021 jordiae/neural-compilers/neural_compilers/utils/utilities.py 99a6bcf03a1964db unverified MIT (permissive)
Temperature Steerable Flows and Boltzmann Generators 2021-08 (from id) noegroup/bgflow/bgflow/_version.py 86d4ff45d6295e29 unverified MIT (permissive)
Multiplying Matrices Without Multiplying 21 Jun 2021 joennlae/halutmatmul/.github/vast.ai/vast_ai_helper.py 1df4b72b2fa42ada unverified MIT (permissive)
Compacter: Efficient Low-Rank Hypercomplex Adapter Layers 8 Jun 2021 rabeehk/compacter/seq2seq/run_seq2seq.py 44e48dfbdecee3da ran · our draft was wrong fingerprinted no licence file found · pointer only
SegFormer: Simple and Efficient Design for Semantic Segmentation with Transformers 31 May 2021 UAws/CV-3315-Is-All-You-Need/bridge/executor.py 744dc51a3ef15686 unverified Apache-2.0 (permissive)
The Power of Scale for Parameter-Efficient Prompt Tuning 18 Apr 2021 VE-FORBRYDERNE/mtj-softtuner/mtj_softtuner/_version.py dbb37355631dabcf unverified Apache-2.0 (permissive)
Constrained non-negative matrix factorization enabling real-time insights of $\textit{in situ}$ and high-throughput experiments 2 Apr 2021 NSLS-II/constrained-matrix-factorization/versioneer.py 86d4ff45d6295e29 unverified BSD-3-Clause (permissive)
Intrinsic Dimensionality Explains the Effectiveness of Language Model Fine-Tuning 22 Dec 2020 identical code first harvested elsewhere 44e48dfbdecee3da ran · our draft was wrong fingerprinted licence of this copy not recorded
SidechainNet: An All-Atom Protein Structure Dataset for Machine Learning 16 Oct 2020 jonathanking/sidechainnet/sidechainnet/_version.py 86d4ff45d6295e29 unverified BSD-3-Clause (permissive)
Crystallography companion agent for high-throughput materials discovery 2020-08 (from id) maffettone/xca/xca/_version.py 86d4ff45d6295e29 unverified BSD-3-Clause (permissive)
Evaluation of synthetic and experimental training data in supervised machine learning applied to charge state detection of quantum dots 2020-05 (from id) microsoft/nanotune/nanotune/_version.py c568a8377abe39e7 unverified MIT (permissive)
ProSelfLC: Progressive Self Label Correction for Training Robust Deep Neural Networks 7 May 2020 kiyoon/pyvideoai/pyvideoai/_version.py c568a8377abe39e7 unverified MIT (permissive)
Retrospective Analysis of the 2019 MineRL Competition on Sample Efficient Reinforcement Learning 10 Mar 2020 AIcrowd/repo2docker/repo2docker/_version.py 86d4ff45d6295e29 unverified BSD-3-Clause (permissive)
Towards Scalable Dataframe Systems 2020-01 (from id) modin-project/modin/modin/_version.py e36817d1c9cffe87 ran Apache-2.0 (permissive)
Generating valid Euclidean distance matrices 7 Oct 2019 noegroup/EDMnets/edmnets/_version.py 86d4ff45d6295e29 unverified MIT (permissive)
A Higher-Order Swiss Army Infinitesimal Jackknife 28 Jul 2019 rgiordan/vittles/vittles/_version.py 86d4ff45d6295e29 unverified Apache-2.0 (permissive)
BioBERT: a pre-trained biomedical language representation model for biomedical text mining 25 Jan 2019 dmis-lab/bern/utils.py 7db82cce6fd97e13 unverified BSD-2-Clause (permissive)
Knowing what you know in brain segmentation using Bayesian deep neural networks 3 Dec 2018 neuronets/kwyk/kwyk/_version.py 86d4ff45d6295e29 unverified Apache-2.0 (permissive)
Stochastic seismic waveform inversion using generative adversarial networks as a geological prior 10 Jun 2018 LukasMosser/stochastic_seismic_waveform_inversion/devito/versioneer.py 86d4ff45d6295e29 unverified MIT (permissive)
Neural Message Passing with Edge Updates for Predicting Properties of Molecules and Materials 8 Jun 2018 nrel/m2p/m2p/_version.py dbb37355631dabcf unverified BSD-3-Clause (permissive)
A Swiss Army Infinitesimal Jackknife 2018-06 (from id) rgiordan/paragami/paragami/_version.py 86d4ff45d6295e29 unverified Apache-2.0 (permissive)
Assessing Generative Models via Precision and Recall 31 May 2018 ok1zjf/lbae/sys_utils.py 1bd4c31f00d84b70 unverified MIT (permissive)
arXiv:aaai_29018 TaicaiChen/PG-LBO/utils/utils_cmd.py 7e54179509606534 unverified MIT (permissive)
arXiv:Liu_Revealing_Key_Details_to_See_Differences_A_Novel_Prototypical_Perspective_CVPR_2025_paper firework8/ProtoGCN/protogcn/smp.py 997611fcf93f8120 unverified MIT (permissive)

This site shows no code text; each File cell links to the file on GitHub at the repository's current default branch, which may have changed since the harvest. "Pointer only" means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence cell for the reason. Per-sample records for a paper are on its paper page under "Code Syntology ran".

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections