Browse › Medical › Text-based de novo Molecule Generation › ChEBI-20
ChEBI-20 Benchmark (Text-based de novo Molecule Generation)
Text-based de novo molecule generation involves utilizing natural language processing (NLP) techniques and chemical information to generate entirely new molecular structures. In this approach, molecular structures are typically encoded as text strings, resembling chemical formulas or SMILES (Simplified Molecular Input Line Entry System). Subsequently, by applying NLP models such as recurrent neural networks (RNNs) or Transformer models, these text strings are processed to generate novel molecular structures with desired properties.
The archive carries no text for this table; the description above is the archive's text for the task Text-based de novo Molecule Generation. archive 2025-07-28
Over time archive 2025-07-28
The chart needs JavaScript; the table below carries every value.
Direction inferred from the metric name, not from the archive: BLEU (higher is better), Frechet ChemNet Distance (FCD) (lower is better). Not inferred (points only, no best-so-far line): Exact Match, Levenshtein, MACCS FTS, Morgan FTS, RDK FTS, Text2Mol, Validity, Parameter Count. Points are placed at the row's paper date; 20 of 20 rows carry one.
Results archive 2025-07-28
Archive rows end at the archive snapshot, 2025-07-28: no result published after that date is in this table. Rank is the archive's row order at that snapshot; not re-ranked here. Metric values are the archive's strings. Column headers sort the table in your browser; each row keeps its archive rank.
| Paper | Code | Ran Syntology | Report | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | LDMol | 92.6 | 53.3 | 0.20 | 6.750 | 97.3 | 93.1 | 95.0 | 94.1 | – | Paper | Code | 2024 | 6 of 9 ran · 3 unverified | report | ||
| 2 | MolReFlect | 90.3 | 51.0 | 11.84 | 92.9 | 81.3 | 86.0 | 97.7 | – | Paper | – | 2024 | no code linked | report | |||
| 3 | BioT5+ | 87.2 | 52.2 | 0.353 | 12.776 | 90.7 | 77.9 | 83.5 | 57.9 | 100 | 252000000 | – | Paper | Code | 2024 | linked, not harvested | report |
| 4 | BioT5 | 86.7 | 41.3 | .43 | 15.097 | 88.6 | 73.4 | 80.1 | 57.6 | 100 | 252000000 | – | Paper | Code | 2023 | 1 of 1 ran · 0 unverified | report |
| 5 | MolReGPT (GPT-4-0413) | 85.7 | 28.0 | 0.41 | 17.14 | 90.3 | 73.9 | 80.5 | 59.3 | 89.9 | None | – | Paper | Code | 2023 | linked, not harvested | report |
| 6 | MolT5-Large | 85.4 | 30.2 | 1.20 | 16.07 | 83.4 | 68.4 | 74.6 | 55.4 | 90.5 | 770000000 | – | Paper | Code | 2022 | 5 of 5 ran · 0 unverified | report |
| 7 | Text+Chem T5-augm base | 85.3 | 32.2 | .05 | 16.87 | 90.1 | 75.7 | 81.6 | 94.3 | 220000000 | – | Paper | Code | 2023 | linked, not harvested | report | |
| 8 | TGM-DLM w/o corr | 82.8 | 24.2 | 0.89 | 16.897 | 87.4 | 72.2 | 77.1 | 58.9 | 78.9 | 180000000 | – | Paper | Code | 2024 | 14 of 21 ran · 7 unverified | report |
| 9 | TGM-DLM | 82.6 | 24.2 | 0.77 | 17.003 | 85.4 | 68.8 | 73.9 | 58.1 | 87.1 | 180000000 | – | Paper | Code | 2024 | 14 of 21 ran · 7 unverified | report |
| 10 | MolFM-Base | 82.2 | 21.0 | 19.445 | 85.4 | 75.8 | 69.7 | 58.3 | 89.2 | 296200000 | – | Paper | Code | 2023 | linked, not harvested | report | |
| 11 | Text+Chem T5-augm small | 81.5 | 19.1 | 0.06 | 21.78 | 86.4 | 67.2 | 74.4 | 95.1 | 60000000 | – | Paper | Code | 2023 | linked, not harvested | report | |
| 12 | MolT5-Large-HV | 81.0 | 31.4 | 0.44 | 16.758 | 87.2 | 72.2 | 78.6 | 59.0 | 99.6 | 770000000 | – | Paper | Code | 2022 | 5 of 5 ran · 0 unverified | report |
| 13 | MolFM-Small | 80.3 | 16.9 | 20.868 | 83.4 | 72.1 | 66.2 | 57.3 | 85.9 | 13620000 | – | Paper | Code | 2023 | linked, not harvested | report | |
| 14 | MolReGPT (GPT-3.5-turbo) | 79.0 | 13.9 | 0.57 | 24.91 | 84.7 | 62.4 | 70.8 | 57.1 | 88.7 | – | Paper | Code | 2023 | linked, not harvested | report | |
| 15 | MolT5-base | 76.9 | 8.1 | 2.18 | 24.458 | 72.1 | 52.9 | 58.8 | 49.6 | 77.2 | 220000000 | – | Paper | Code | 2022 | 5 of 5 ran · 0 unverified | report |
| 16 | GIT-Mol-caption | 75.6 | 5.1 | 26.315 | 73.8 | 51.9 | 58.2 | 92.8 | – | Paper | Code | 2023 | 1 of 1 ran · 0 unverified | report | |||
| 17 | MolT5-small | 75.5 | 7.9 | 2.49 | 25.988 | 70.3 | 51.7 | 56.8 | 48.2 | 72.1 | 60000000 | – | Paper | Code | 2022 | 5 of 5 ran · 0 unverified | report |
| 18 | Text+Chem T5 base | 75 | 21.2 | 0.061 | 27.39 | 87.4 | 69.7 | 76.7 | 79.2 | 220000000 | – | Paper | Code | 2023 | linked, not harvested | report | |
| 19 | Text+Chem T5 small | 73.9 | 15.7 | 0.066 | 28.54 | 85.9 | 66 | 73.6 | 77.6 | 60000000 | – | Paper | Code | 2023 | linked, not harvested | report | |
| 20 | MolXPT | 21.5 | 0.45 | 85.9 | 66.7 | 75.7 | 57.8 | 98.3 | 350000000 | – | Paper | Code | 2023 | linked, not harvested | report |
All 20 rows shown. 20 link to a paper page on this site; 0 are marked as using additional training data in the archive. No GitHub stars are tracked; "Code" is the first repository the archive lists for the row. The archive carries no row tags, review links or community-submitted rows for this table; none are shown. archive 2025-07-28
Syntology Ran reads "N of M ran · U unverified": of the M code samples Syntology harvested from repositories linked to that row's paper (joined by arXiv id), N executed on a synthesized input and the other U = M−N are unverified (harvested, no recorded run). It counts code from repositories linked to that row's paper, not this result: the row's number was not reproduced and nothing here is a correctness claim. The other cell texts mean no graph line for the row: "linked, not harvested" (the archive links code, Syntology has not harvested it), "no code linked" (no code link in the archive), "not matched" (the row's paper URL matched no paper on this site). 9 rows have a graph line, from 5 distinct papers; 9 rows (5 papers) have at least one sample that ran. Counting each paper once: Syntology ran 27 of 37 samples; 10 unverified. Separately, 22 of those 37 are pointer-only (licence): the site points at that code rather than redistributing it, a licence property recorded for ran and unverified samples alike; each cell's tooltip carries the row's own pointer-only count. Read from the graph 2026-09-25. Per-sample status is on the paper page.
Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections