Papers › TransTab: Learning Transferable Tabular Transformers Across Tables

TransTab: Learning Transferable Tabular Transformers Across Tables

19 May 2022arXiv:2205.09328archive 2025-07-28

Zifeng Wang, Jimeng Sun

Tabular data (or tables) are the most widely used data format in machine learning (ML). However, ML models often assume the table structure keeps fixed in training and testing. Before ML modeling, heavy data cleaning is required to merge disparate tables with different columns. This preprocessing often incurs significant data waste (e.g., removing unmatched columns and samples). How to learn ML models from multiple tables with partially overlapping columns? How to incrementally update ML models as more columns become available over time? Can we leverage model pretraining on multiple distinct tables? How to train an ML model which can predict on an unseen table? To answer all those questions, we propose to relax fixed table structures by introducing a Transferable Tabular Transformer (TransTab) for tables. The goal of TransTab is to convert each sample (a row in the table) to a generalizable embedding vector, and then apply stacked transformers for feature encoding. One methodology insight is combining column description and table cells as the raw input to a gated transformer model. The other insight is to introduce supervised and self-supervised pretraining to improve model performance. We compare TransTab with multiple baseline methods on diverse benchmark datasets and five oncology clinical trial datasets. Overall, TransTab ranks 1.00, 1.00, 1.78 out of 12 methods in supervised learning, feature incremental learning, and transfer learning scenarios, respectively; and the proposed pretraining leads to 2.3% AUC lift on average over the supervised learning.

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TransTabCLSToken ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran · metamorphic tier: deterministic fingerprinted BSD-2-Clause (permissive) · 38d353ae87b1df76 · report
TransTabEncoder ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran · metamorphic tier: deterministic BSD-2-Clause (permissive) · 248641db8bf9e6d3 · report
TransTabFeatureProcessor ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran · metamorphic tier: deterministic BSD-2-Clause (permissive) · ef72c0a447db8dbe · report
TransTabInputEncoder ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran · metamorphic tier: deterministic fingerprinted BSD-2-Clause (permissive) · e082d5818ce38db2 · report
TransTabLinearClassifier ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran BSD-2-Clause (permissive) · 4267538aa1610439 · report
TransTabNumEmbedding ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran · metamorphic tier: deterministic BSD-2-Clause (permissive) · 4feeac0368ae8f3f · report
TransTabTransformerLayer ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran · metamorphic tier: deterministic BSD-2-Clause (permissive) · 40da78df277bbc73 · report
TransTabWordEmbedding ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran · metamorphic tier: deterministic BSD-2-Clause (permissive) · bc3b678332b01152 · report
_get_activation_fn ryanwangzf/transtab/transtab/modeling_transtab.py official repository ran · our draft was wrong BSD-2-Clause (permissive) · 5189f4bea3053264 · report
TransTabFeatureExtractor ryanwangzf/transtab/transtab/modeling_transtab.py official repository unverified BSD-2-Clause (permissive) · dd77da7eb6ce33dc · report
TransTabModel ryanwangzf/transtab/transtab/modeling_transtab.py official repository unverified BSD-2-Clause (permissive) · b0592bb5e780d2d8 · report

Tasks

Incremental LearningTransfer Learning

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Methods

Absolute Position EncodingsAdamAttentionBPEDense ConnectionsDropoutLabel SmoothingLayer NormalizationLinear LayerMulti-Head AttentionPosition-Wise Feed-Forward LayerResidual ConnectionSoftmaxTransformer

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