Papers › Training Graph Neural Networks with 1000 Layers

Training Graph Neural Networks with 1000 Layers

14 Jun 2021arXiv:2106.07476archive 2025-07-28

Guohao Li, Matthias Müller, Bernard Ghanem, Vladlen Koltun

Deep graph neural networks (GNNs) have achieved excellent results on various tasks on increasingly large graph datasets with millions of nodes and edges. However, memory complexity has become a major obstacle when training deep GNNs for practical applications due to the immense number of nodes, edges, and intermediate activations. To improve the scalability of GNNs, prior works propose smart graph sampling or partitioning strategies to train GNNs with a smaller set of nodes or sub-graphs. In this work, we study reversible connections, group convolutions, weight tying, and equilibrium models to advance the memory and parameter efficiency of GNNs. We find that reversible connections in combination with deep network architectures enable the training of overparameterized GNNs that significantly outperform existing methods on multiple datasets. Our models RevGNN-Deep (1001 layers with 80 channels each) and RevGNN-Wide (448 layers with 224 channels each) were both trained on a single commodity GPU and achieve an ROC-AUC of 87.74 ±0.13 and 88.24 ±0.15 on the ogbn-proteins dataset. To the best of our knowledge, RevGNN-Deep is the deepest GNN in the literature by one order of magnitude. Please visit our project website https://www.deepgcns.org/arch/gnn1000 for more information.

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lightaime/deep_gcns_torch mentioned on GitHubpytorchMIT report
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norm_layer lightaime/deep_gcns_torch/gcn_lib/dense/torch_nn.py official repository ran · our draft was wrong MIT (permissive) · 09e6ddb17c0adf28 · report
act_layer lightaime/deep_gcns_torch/gcn_lib/dense/torch_nn.py official repository unverified MIT (permissive) · 81d31aad45664fa2 · report
act_layer lightaime/deep_gcns_torch/gcn_lib/sparse/torch_nn.py official repository unverified MIT (permissive) · 6b65956f32ad8f13 · report
batched_index_select lightaime/deep_gcns_torch/gcn_lib/dense/torch_nn.py official repository unverified MIT (permissive) · c52260211d1aa99f · report
dense_knn_matrix lightaime/deep_gcns_torch/gcn_lib/dense/torch_edge.py official repository unverified MIT (permissive) · 7bc52d942ecf4430 · report
knn_graph_matrix lightaime/deep_gcns_torch/gcn_lib/sparse/torch_edge.py official repository unverified MIT (permissive) · c69d40b71d37d2d2 · report
knn_matrix lightaime/deep_gcns_torch/gcn_lib/sparse/torch_edge.py official repository unverified MIT (permissive) · 2f0e8668c137d3aa · report
load_pretrained_models lightaime/deep_gcns_torch/utils/ckpt_util.py official repository unverified MIT (permissive) · 3be91b595771f70b · report
load_pretrained_optimizer lightaime/deep_gcns_torch/utils/ckpt_util.py official repository unverified MIT (permissive) · c845b58421ba1367 · report
norm_layer lightaime/deep_gcns_torch/gcn_lib/sparse/torch_nn.py official repository unverified MIT (permissive) · 34c1fc07af3538f8 · report
pairwise_distance lightaime/deep_gcns_torch/gcn_lib/dense/torch_edge.py official repository unverified MIT (permissive) · bc7cc66599be9207 · report

Tasks

Graph SamplingNode Property Prediction

1 archive task tag without a task page not shown.

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Node Property Prediction ogbn-arxiv RevGAT+N.Adj+LabelReuse+SelfKD Ext. data No #22 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv RevGAT+N.Adj+LabelReuse+SelfKD Number of params 2098256 #22 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv RevGAT+N.Adj+LabelReuse+SelfKD Test Accuracy 0.7426 ± 0.0017 #22 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv RevGAT+N.Adj+LabelReuse+SelfKD Validation Accuracy 0.7497 ± 0.0008 #22 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv RevGAT+NormAdj+LabelReuse Ext. data No #29 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv RevGAT+NormAdj+LabelReuse Number of params 2098256 #29 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv RevGAT+NormAdj+LabelReuse Test Accuracy 0.7402 ± 0.0018 #29 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv RevGAT+NormAdj+LabelReuse Validation Accuracy 0.7501 ± 0.0010 #29 of 86 Archive leaderboard report
Node Property Prediction ogbn-products RevGNN-112 Ext. data No #30 of 64 Archive leaderboard report
Node Property Prediction ogbn-products RevGNN-112 Number of params 2945007 #30 of 64 Archive leaderboard report
Node Property Prediction ogbn-products RevGNN-112 Test Accuracy 0.8307 ± 0.0030 #30 of 64 Archive leaderboard report
Node Property Prediction ogbn-products RevGNN-112 Validation Accuracy 0.9290 ± 0.0007 #30 of 64 Archive leaderboard report
Node Property Prediction ogbn-proteins RevGNN-Wide Ext. data No #4 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins RevGNN-Wide Number of params 68471608 #4 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins RevGNN-Wide Test ROC-AUC 0.8824 ± 0.0015 #4 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins RevGNN-Wide Validation ROC-AUC 0.9450 ± 0.0008 #4 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins RevGNN-Deep Ext. data No #6 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins RevGNN-Deep Number of params 20031384 #6 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins RevGNN-Deep Test ROC-AUC 0.8774 ± 0.0013 #6 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins RevGNN-Deep Validation ROC-AUC 0.9326 ± 0.0006 #6 of 26 Archive leaderboard report

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