Papers › Towards Evaluating and Building Versatile Large Language Models for Medicine

Towards Evaluating and Building Versatile Large Language Models for Medicine

22 Aug 2024arXiv:2408.12547archive 2025-07-28

Chaoyi Wu, Pengcheng Qiu, Jinxin Liu, Hongfei Gu, Na Li, Ya zhang, Yanfeng Wang, Weidi Xie

In this study, we present MedS-Bench, a comprehensive benchmark designed to evaluate the performance of large language models (LLMs) in clinical contexts. Unlike existing benchmarks that focus on multiple-choice question answering, MedS-Bench spans 11 high-level clinical tasks, including clinical report summarization, treatment recommendations, diagnosis, named entity recognition, and medical concept explanation, among others. We evaluated six leading LLMs, e.g., MEDITRON, Mistral, InternLM 2, Llama 3, GPT-4, and Claude-3.5 using few-shot prompting, and found that even the most sophisticated models struggle with these complex tasks. To address these limitations, we developed MedS-Ins, a large-scale instruction tuning dataset for medicine. MedS-Ins comprises 58 medically oriented language corpora, totaling 13.5 million samples across 122 tasks. To demonstrate the dataset's utility, we conducted a proof-of-concept experiment by performing instruction tuning on a lightweight, open-source medical language model. The resulting model, MMedIns-Llama 3, significantly outperformed existing models across nearly all clinical tasks. To promote further advancements in the application of LLMs to clinical challenges, we have made the MedS-Ins dataset fully accessible and invite the research community to contribute to its expansion.Additionally, we have launched a dynamic leaderboard for MedS-Bench, which we plan to regularly update the test set to track progress and enhance the adaptation of general LLMs to the medical domain. Leaderboard: https://henrychur.github.io/MedS-Bench/. Github: https://github.com/MAGIC-AI4Med/MedS-Ins.

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clinical_outcome_accuracy magic-ai4med/meds-ins/Metrics/ClinicalOutcomePrediction.py official repository ran fingerprinted licence not identified · pointer only · 62422cfd04737f43 · report
diagnosis_accuracy magic-ai4med/meds-ins/Metrics/Diagnosis.py official repository ran fingerprinted licence not identified · pointer only · 3bfa0964e50a53f0 · report
hard_ner_f1 magic-ai4med/meds-ins/Metrics/NamedEntityRecognition.py official repository ran fingerprinted licence not identified · pointer only · e8bab91eef87ee9b · report
information_extraction_accuracy magic-ai4med/meds-ins/Metrics/InformationExtraction.py official repository ran fingerprinted licence not identified · pointer only · 5aeddcce1d090dea · report
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nli_accuracy magic-ai4med/meds-ins/Metrics/NatureLanguageInference.py official repository ran fingerprinted licence not identified · pointer only · e43b2ff01d72a919 · report
parse_entities magic-ai4med/meds-ins/Metrics/NamedEntityRecognition.py official repository ran licence not identified · pointer only · 340961a1e2c4108d · report

Tasks

Multiple-choiceNamed Entity RecognitionQuestion Answeringnamed-entity-recognition

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Methods

Absolute Position EncodingsAdamAttentionBPEDense ConnectionsDropoutFocusGPT-4LLaMALabel SmoothingLayer NormalizationLinear LayerMulti-Head AttentionPosition-Wise Feed-Forward LayerResidual ConnectionSETSoftmaxTransformer

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