Papers › Spatial Attention Kinetic Networks with E(n)-Equivariance

Spatial Attention Kinetic Networks with E(n)-Equivariance

21 Jan 2023arXiv:2301.08893archive 2025-07-28

Yuanqing Wang, John D. Chodera

Neural networks that are equivariant to rotations, translations, reflections, and permutations on n-dimensional geometric space have shown promise in physical modeling for tasks such as accurately but inexpensively modeling complex potential energy surfaces to guiding the sampling of complex dynamical systems or forecasting their time evolution. Current state-of-the-art methods employ spherical harmonics to encode higher-order interactions among particles, which are computationally expensive. In this paper, we propose a simple alternative functional form that uses neurally parametrized linear combinations of edge vectors to achieve equivariance while still universally approximating node environments. Incorporating this insight, we design spatial attention kinetic networks with E(n)-equivariance, or SAKE, which are competitive in many-body system modeling tasks while being significantly faster.

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choderalab/sake officialmentioned in paperjax report
ZhangGroup-MITChemistry/Schake_GNN mentioned on GitHubpytorch report

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double_sigmoid choderalab/sake/sake/layers.py official repository ran · honoured contract fingerprinted MIT (permissive) · 13633e216595f5b7 · report
ContinuousFilterConvolutionWithConcatenation choderalab/sake/sake/layers.py official repository unverified MIT (permissive) · 05449efc022deb4f · report
ExpNormalSmearing choderalab/sake/sake/layers.py official repository unverified MIT (permissive) · a034888feb1bf9cc · report
SAKELayer choderalab/sake/sake/layers.py official repository unverified MIT (permissive) · 129dff2095fd5412 · report
unsorted_segment_sum ZhangGroup-MITChemistry/Schake_GNN/Schake/v1/Schake_model_v1.py community (archive-listed) ran · our draft was wrong no licence file found · pointer only · 5fb62a78eb65d3d7 · report

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