Papers › Sparse Training of Discrete Diffusion Models for Graph Generation

Sparse Training of Discrete Diffusion Models for Graph Generation

3 Nov 2023arXiv:2311.02142archive 2025-07-28

Yiming Qin, Clement Vignac, Pascal Frossard

Generative graph models struggle to scale due to the need to predict the existence or type of edges between all node pairs. To address the resulting quadratic complexity, existing scalable models often impose restrictive assumptions such as a cluster structure within graphs, thus limiting their applicability. To address this, we introduce SparseDiff, a novel diffusion model based on the observation that almost all large graphs are sparse. By selecting a subset of edges, SparseDiff effectively leverages sparse graph representations both during the noising process and within the denoising network, which ensures that space complexity scales linearly with the number of chosen edges. During inference, SparseDiff progressively fills the adjacency matrix with the selected subsets of edges, mirroring the training process. Our model demonstrates state-of-the-art performance across multiple metrics on both small and large datasets, confirming its effectiveness and robustness across varying graph sizes. It also ensures faster convergence, particularly on larger graphs, achieving a fourfold speedup on the large Ego dataset compared to dense models, thereby paving the way for broader applications.

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l2 qym7/sparsediff/sparse_diffusion/analysis/dist_helper.py official repository ran · honoured contract fingerprinted MIT (permissive) · 039fc6561a9516bc · report
load_pickle qym7/sparsediff/sparse_diffusion/datasets/dataset_utils.py official repository ran · our draft was wrong MIT (permissive) · 70db7c9cbe9e680d · report
setup_wandb qym7/sparsediff/sparse_diffusion/utils.py official repository ran MIT (permissive) · 938ae36c029d92da · report
to_dense qym7/sparsediff/sparse_diffusion/utils.py official repository ran MIT (permissive) · fbba1d3a8b6cab5a · report
to_dense_node qym7/sparsediff/sparse_diffusion/utils.py official repository ran MIT (permissive) · 861782c3a73e36ba · report
compare_hash qym7/sparsediff/sparse_diffusion/datasets/guacamol_dataset.py official repository unverified MIT (permissive) · ab10f4ba7e15c9c9 · report
remove_hydrogens qym7/sparsediff/sparse_diffusion/datasets/dataset_utils.py official repository unverified MIT (permissive) · dc5bc1ae656e5ea3 · report

Tasks

DenoisingGraph Generation

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Methods

Diffusion

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