Papers › SignGT: Signed Attention-based Graph Transformer for Graph Representation Learning

SignGT: Signed Attention-based Graph Transformer for Graph Representation Learning

17 Oct 2023arXiv:2310.11025archive 2025-07-28

Jinsong Chen, Gaichao Li, John E. Hopcroft, Kun He

The emerging graph Transformers have achieved impressive performance for graph representation learning over graph neural networks (GNNs). In this work, we regard the self-attention mechanism, the core module of graph Transformers, as a two-step aggregation operation on a fully connected graph. Due to the property of generating positive attention values, the self-attention mechanism is equal to conducting a smooth operation on all nodes, preserving the low-frequency information. However, only capturing the low-frequency information is inefficient in learning complex relations of nodes on diverse graphs, such as heterophily graphs where the high-frequency information is crucial. To this end, we propose a Signed Attention-based Graph Transformer (SignGT) to adaptively capture various frequency information from the graphs. Specifically, SignGT develops a new signed self-attention mechanism (SignSA) that produces signed attention values according to the semantic relevance of node pairs. Hence, the diverse frequency information between different node pairs could be carefully preserved. Besides, SignGT proposes a structure-aware feed-forward network (SFFN) that introduces the neighborhood bias to preserve the local topology information. In this way, SignGT could learn informative node representations from both long-range dependencies and local topology information. Extensive empirical results on both node-level and graph-level tasks indicate the superiority of SignGT against state-of-the-art graph Transformers as well as advanced GNNs.

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Tasks

Graph Representation LearningNode ClassificationRepresentation Learning

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Node Classification Actor SignGT Accuracy 38.65±0.32 #7 of 62 Archive leaderboard report
Node Classification Chameleon SignGT Accuracy 74.31±1.24 #19 of 61 Archive leaderboard report
Node Classification Squirrel SignGT Accuracy 64.25±1.48 #17 of 59 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

Methods

Absolute Position EncodingsAdamAttentionBPEDense ConnectionsDropoutGraph TransformerLabel SmoothingLapEigenLaplacian PELayer NormalizationLinear LayerMulti-Head AttentionPosition-Wise Feed-Forward LayerResidual ConnectionSoftmaxTransformer

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