Papers › Sample-Efficient Optimization in the Latent Space of Deep Generative Models via...

Sample-Efficient Optimization in the Latent Space of Deep Generative Models via Weighted Retraining

16 Jun 2020NeurIPS 2020 12arXiv:2006.09191archive 2025-07-28

Austin Tripp, Erik Daxberger, José Miguel Hernández-Lobato

Many important problems in science and engineering, such as drug design, involve optimizing an expensive black-box objective function over a complex, high-dimensional, and structured input space. Although machine learning techniques have shown promise in solving such problems, existing approaches substantially lack sample efficiency. We introduce an improved method for efficient black-box optimization, which performs the optimization in the low-dimensional, continuous latent manifold learned by a deep generative model. In contrast to previous approaches, we actively steer the generative model to maintain a latent manifold that is highly useful for efficiently optimizing the objective. We achieve this by periodically retraining the generative model on the data points queried along the optimization trajectory, as well as weighting those data points according to their objective function value. This weighted retraining can be easily implemented on top of existing methods, and is empirically shown to significantly improve their efficiency and performance on synthetic and real-world optimization problems.

PaperPDFConference PDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2006.09191")

Code

Syntology Ran 2 of 6 code samples harvested from 2 repositories linked to this paper; 4 have no recorded run. Of those that ran: 2 ran · our draft was wrong.

By repository: official repository: 2 samples from 1 repository, 0 ran; found in paper text by Syntology: 1 sample from 1 repository, 0 ran; 3 identical to code first harvested elsewhere. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

cambridge-mlg/weighted-retraining officialmentioned in papermentioned on GitHubpytorchMIT report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

6 samples harvested; 2 ran; 0 honoured the contract we drafted; 4 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

2ran · our draft was wrong
4unverified

Licence: 4 of the 6 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from 2 repositories linked to this paper, official or community; each sample names its own and says which. Some samples are identical code Syntology first harvested from another repository; for those, this paper's copy is not located and its licence is not recorded. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

gp_performance_metrics cambridge-mlg/weighted-retraining/weighted_retraining/gp_train.py official repository unverified MIT (permissive) · 965c6ca9f6bdf6cb · report
robust_multi_restart_optimizer cambridge-mlg/weighted-retraining/weighted_retraining/gp_opt.py official repository unverified MIT (permissive) · b30f075b7653c03d · report
ZincGrammarModel mkusner/grammarVAE/molecule_vae.py found in paper text by Syntology unverified no licence file found · pointer only · cb40f0c69ca29671 · report
pop_or_nothing identical code first harvested elsewhere ran · our draft was wrong fingerprinted licence of this copy not recorded · 16eaf789c4a4401d · report
prods_to_eq identical code first harvested elsewhere ran · our draft was wrong licence of this copy not recorded · 0bf41e0b28d9835c · report
get_zinc_tokenizer identical code first harvested elsewhere unverified licence of this copy not recorded · bd5df031b64e57d3 · report

Tasks

Drug DesignMolecular Graph Generation

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections