Papers › Roto-Translation Equivariant Convolutional Networks: Application to Histopathology...

Roto-Translation Equivariant Convolutional Networks: Application to Histopathology Image Analysis

20 Feb 2020arXiv:2002.08725archive 2025-07-28

Maxime W. Lafarge, Erik J. Bekkers, Josien P. W. Pluim, Remco Duits, Mitko Veta

Rotation-invariance is a desired property of machine-learning models for medical image analysis and in particular for computational pathology applications. We propose a framework to encode the geometric structure of the special Euclidean motion group SE(2) in convolutional networks to yield translation and rotation equivariance via the introduction of SE(2)-group convolution layers. This structure enables models to learn feature representations with a discretized orientation dimension that guarantees that their outputs are invariant under a discrete set of rotations. Conventional approaches for rotation invariance rely mostly on data augmentation, but this does not guarantee the robustness of the output when the input is rotated. At that, trained conventional CNNs may require test-time rotation augmentation to reach their full capability. This study is focused on histopathology image analysis applications for which it is desirable that the arbitrary global orientation information of the imaged tissues is not captured by the machine learning models. The proposed framework is evaluated on three different histopathology image analysis tasks (mitosis detection, nuclei segmentation and tumor classification). We present a comparative analysis for each problem and show that consistent increase of performances can be achieved when using the proposed framework.

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CoordRotationInv tueimage/se2cnn/se2cnn/rotation_matrix.py official repository unverified Apache-2.0 (permissive) · b6acdd3f853d8884 · report
LinIntIndicesAndWeights tueimage/se2cnn/se2cnn/rotation_matrix.py official repository unverified Apache-2.0 (permissive) · 14b669b1c60bc1ef · report
ToLinearIndex tueimage/se2cnn/se2cnn/rotation_matrix.py official repository unverified Apache-2.0 (permissive) · dcd0c4c769494f73 · report
se2n_se2n tueimage/se2cnn/se2cnn/layers.py official repository unverified Apache-2.0 (permissive) · 38519922bb8f23b9 · report
spatial_max_pool tueimage/se2cnn/se2cnn/layers.py official repository unverified Apache-2.0 (permissive) · a8a721cdc3c98204 · report
z2_se2n tueimage/se2cnn/se2cnn/layers.py official repository unverified Apache-2.0 (permissive) · cc67386b2aff8d51 · report

Tasks

BIG-bench Machine LearningBreast Tumour ClassificationColorectal Gland Segmentation:Data AugmentationMedical Image AnalysisMitosis DetectionMulti-tissue Nucleus SegmentationTranslation

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Breast Tumour Classification PCam G-CNN (C8) AUC 0.968 #5 of 16 Archive leaderboard report
Breast Tumour Classification PCam G-CNN (C12) AUC 0.962 #9 of 16 Archive leaderboard report
Colorectal Gland Segmentation: CRAG G-CNN (C8) Dice 0.866 #7 of 15 Archive leaderboard report
Colorectal Gland Segmentation: CRAG G-CNN (C8) F1-score 0.837 #7 of 15 Archive leaderboard report
Colorectal Gland Segmentation: CRAG G-CNN (C8) Hausdorff Distance (mm) 157.4 #7 of 15 Archive leaderboard report
Colorectal Gland Segmentation: CRAG G-CNN (C12) Dice 0.834 #11 of 15 Archive leaderboard report
Colorectal Gland Segmentation: CRAG G-CNN (C12) F1-score 0.818 #11 of 15 Archive leaderboard report
Colorectal Gland Segmentation: CRAG G-CNN (C12) Hausdorff Distance (mm) 192.2 #11 of 15 Archive leaderboard report
Multi-tissue Nucleus Segmentation Kumar G-CNN (C12) Dice 0.814 #7 of 18 Archive leaderboard report
Multi-tissue Nucleus Segmentation Kumar G-CNN (C12) Hausdorff Distance (mm) 53.4 #7 of 18 Archive leaderboard report
Multi-tissue Nucleus Segmentation Kumar G-CNN (C12) Dice 0.811 #9 of 18 Archive leaderboard report
Multi-tissue Nucleus Segmentation Kumar G-CNN (C12) Hausdorff Distance (mm) 51.9 #9 of 18 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

Methods

Convolution

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