Papers › ROCS-Derived Features for Virtual Screening

ROCS-Derived Features for Virtual Screening

6 Jun 2016arXiv:1606.01822archive 2025-07-28

Steven Kearnes, Vijay Pande

Rapid overlay of chemical structures (ROCS) is a standard tool for the calculation of 3D shape and chemical ("color") similarity. ROCS uses unweighted sums to combine many aspects of similarity, yielding parameter-free models for virtual screening. In this report, we decompose the ROCS color force field into "color components" and "color atom overlaps", novel color similarity features that can be weighted in a system-specific manner by machine learning algorithms. In cross-validation experiments, these additional features significantly improve virtual screening performance (ROC AUC scores) relative to standard ROCS.

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