Papers › Robust Variational Autoencoders for Outlier Detection and Repair of Mixed-Type Data

Robust Variational Autoencoders for Outlier Detection and Repair of Mixed-Type Data

15 Jul 2019arXiv:1907.06671archive 2025-07-28

Simão Eduardo, Alfredo Nazábal, Christopher K. I. Williams, Charles Sutton

We focus on the problem of unsupervised cell outlier detection and repair in mixed-type tabular data. Traditional methods are concerned only with detecting which rows in the dataset are outliers. However, identifying which cells are corrupted in a specific row is an important problem in practice, and the very first step towards repairing them. We introduce the Robust Variational Autoencoder (RVAE), a deep generative model that learns the joint distribution of the clean data while identifying the outlier cells, allowing their imputation (repair). RVAE explicitly learns the probability of each cell being an outlier, balancing different likelihood models in the row outlier score, making the method suitable for outlier detection in mixed-type datasets. We show experimentally that not only RVAE performs better than several state-of-the-art methods in cell outlier detection and repair for tabular data, but also that is robust against the initial hyper-parameter selection.

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create_data_folders sfme/RVAE_MixedTypes/src/dataset_prep_simple/dataset_prep_utils.py official repository unverified MIT (permissive) · 35b614de96909522 · report
create_data_splits sfme/RVAE_MixedTypes/src/dataset_prep_simple/dataset_prep_utils.py official repository unverified MIT (permissive) · 0f9a3d016ca90a7d · report
getArgs sfme/RVAE_MixedTypes/src/core_models/parser_arguments.py official repository unverified MIT (permissive) · 7a6605b73571a685 · report
get_auc_metrics sfme/RVAE_MixedTypes/src/core_models/utils.py official repository unverified MIT (permissive) · b5672f1c083f6618 · report
get_avpr_metrics sfme/RVAE_MixedTypes/src/core_models/utils.py official repository unverified MIT (permissive) · a9664705f476d18d · report
logit_fn sfme/RVAE_MixedTypes/src/core_models/model_utils.py official repository unverified MIT (permissive) · faa345f3ec52e705 · report
nll_categ_global sfme/RVAE_MixedTypes/src/core_models/model_utils.py official repository unverified MIT (permissive) · ecf06b84d66c4983 · report
nll_gauss_global sfme/RVAE_MixedTypes/src/core_models/model_utils.py official repository unverified MIT (permissive) · 4555a0d1dd7fd087 · report

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ImputationOutlier Detection

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