Papers › Re-Think and Re-Design Graph Neural Networks in Spaces of Continuous Graph Diffusion...

Re-Think and Re-Design Graph Neural Networks in Spaces of Continuous Graph Diffusion Functionals

1 Jul 2023NeurIPS 2023 11arXiv:2307.00222archive 2025-07-28

Graph neural networks (GNNs) are widely used in domains like social networks and biological systems. However, the locality assumption of GNNs, which limits information exchange to neighboring nodes, hampers their ability to capture long-range dependencies and global patterns in graphs. To address this, we propose a new inductive bias based on variational analysis, drawing inspiration from the Brachistochrone problem. Our framework establishes a mapping between discrete GNN models and continuous diffusion functionals. This enables the design of application-specific objective functions in the continuous domain and the construction of discrete deep models with mathematical guarantees. To tackle over-smoothing in GNNs, we analyze the existing layer-by-layer graph embedding models and identify that they are equivalent to l2-norm integral functionals of graph gradients, which cause over-smoothing. Similar to edge-preserving filters in image denoising, we introduce total variation (TV) to align the graph diffusion pattern with global community topologies. Additionally, we devise a selective mechanism to address the trade-off between model depth and over-smoothing, which can be easily integrated into existing GNNs. Furthermore, we propose a novel generative adversarial network (GAN) that predicts spreading flows in graphs through a neural transport equation. To mitigate vanishing flows, we customize the objective function to minimize transportation within each community while maximizing inter-community flows. Our GNN models achieve state-of-the-art (SOTA) performance on popular graph learning benchmarks such as Cora, Citeseer, and Pubmed.

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Code

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Dandy5721/GNN-PDE-COV officialpytorch report

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3ran · our draft was wrong

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add_labels Dandy5721/GNN-PDE-COV/scripts+/GRAND+/src/run_GNN.py official repository ran · our draft was wrong no licence file found · pointer only · 2ca430b1c5874d57 · report
get_label_masks Dandy5721/GNN-PDE-COV/scripts+/GRAND+/src/run_GNN.py official repository ran · our draft was wrong no licence file found · pointer only · 14ff093eb3815088 · report
get_optimizer Dandy5721/GNN-PDE-COV/scripts+/GRAND+/src/run_GNN.py official repository ran · our draft was wrong no licence file found · pointer only · dab3444777a2e6c7 · report

Tasks

DenoisingGraph EmbeddingGraph LearningImage DenoisingInductive BiasNode Classification

1 archive task tag without a task page not shown.

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Node Classification Cora with Public Split: fixed 20 nodes per class GCN-TV Accuracy 86.3% #2 of 36 Archive leaderboard report

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Methods

ALIGNDiffusion

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