Papers › Quaternions in molecular modeling

Quaternions in molecular modeling

23 Jun 2005arXiv:physics/0506177links table onlyarchive 2025-07-28

Charles F. F. Karney

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Quaternions are an important tool to describe the orientation of a molecule. This paper considers the use of quaternions in matching two conformations of a molecule, in interpolating rotations, in performing statistics on orientational data, in the random sampling of rotations, and in establishing grids in orientation space. These examples show that many of the rotational problems that arise in molecular modeling may be handled simply and efficiently using quaternions.

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