Papers › PyPulse: A Python Library for Biosignal Imputation

PyPulse: A Python Library for Biosignal Imputation

9 Dec 2024arXiv:2412.06382archive 2025-07-28

Kevin Gao, Maxwell A. Xu, James M. Rehg, Alexander Moreno

We introduce PyPulse, a Python package for imputation of biosignals in both clinical and wearable sensor settings. Missingness is commonplace in these settings and can arise from multiple causes, such as insecure sensor attachment or data transmission loss. PyPulse's framework provides a modular and extendable framework with high ease-of-use for a broad userbase, including non-machine-learning bioresearchers. Specifically, its new capabilities include using pre-trained imputation methods out-of-the-box on custom datasets, running the full workflow of training or testing a baseline method with a single line of code, and comparing baseline methods in an interactive visualization tool. We released PyPulse under the MIT License on Github and PyPI. The source code can be found at: https://github.com/rehg-lab/pulseimpute.

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