Papers › Penzai + Treescope: A Toolkit for Interpreting, Visualizing, and Editing Models As Data
Penzai + Treescope: A Toolkit for Interpreting, Visualizing, and Editing Models As Data
Daniel D. Johnson
Much of today's machine learning research involves interpreting, modifying or visualizing models after they are trained. I present Penzai, a neural network library designed to simplify model manipulation by representing models as simple data structures, and Treescope, an interactive pretty-printer and array visualizer that can visualize both model inputs/outputs and the models themselves. Penzai models are built using declarative combinators that expose the model forward pass in the structure of the model object itself, and use named axes to ensure each operation is semantically meaningful. With Penzai's tree-editing selector system, users can both insert and replace model components, allowing them to intervene on intermediate values or make other edits to the model structure. Users can then get immediate feedback by visualizing the modified model with Treescope. I describe the motivation and main features of Penzai and Treescope, and discuss how treating the model as data enables a variety of analyses and interventions to be implemented as data-structure transformations, without requiring model designers to add explicit hooks.
In Syntology View this paper on Syntology: its repositories, every harvested function with whether it ran, its licence and the call to fetch it.
Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.
For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2408.00211")
Code
Syntology Ran 14 of 23 code samples harvested from 2 repositories linked to this paper; 9 have no recorded run. Of those that ran: 14 ran with no contract checked.
By repository: official repository: 23 samples from 2 repositories, 14 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.
Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.
Code Syntology ran Syntology
23 samples harvested; 14 ran; 0 honoured the contract we drafted; 9 have no recorded run. Read from Syntology's graph 2026-09-25; that is when this build read the record, not when the samples ran.
Licence: 0 of the 23 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.
Harvested from 2 repositories linked to this paper, official or community; each sample names its own and says which. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.
Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.
Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.
1ed46793bced4f6f · report
491da2a807a0d703 · report
0bcd3e980f7fe655 · report
3af90f8f7873fac9 · report
07b1fce0fdc1eefd · report
5c689b98d9651bb5 · report
8da90bf2b11facb7 · report
49862fb509edca46 · report
c54a7b3f3d04bf76 · report
cc38f8434830dd01 · report
7f0011a936783767 · report
c716cd4fc3d93251 · report
ad130894fc372aec · report
314cb1c24954c222 · report
4eb59933d52ad100 · report
e4fd281c5d149c61 · report
ffd28ac2c65414f3 · report
5c75d7c159ec68b6 · report
fe56c9c538b60fab · report
ad8ee3a7572721bb · report
c45870654f09629f · report
4fe2c2ee820dc796 · report
2a11ffd4903b882a · report
Results from the paper archive 2025-07-28
No leaderboard rows for this paper in the archive.
Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections