Papers › Path Neural Networks: Expressive and Accurate Graph Neural Networks

Path Neural Networks: Expressive and Accurate Graph Neural Networks

9 Jun 2023arXiv:2306.05955archive 2025-07-28

Gaspard Michel, Giannis Nikolentzos, Johannes Lutzeyer, Michalis Vazirgiannis

Graph neural networks (GNNs) have recently become the standard approach for learning with graph-structured data. Prior work has shed light into their potential, but also their limitations. Unfortunately, it was shown that standard GNNs are limited in their expressive power. These models are no more powerful than the 1-dimensional Weisfeiler-Leman (1-WL) algorithm in terms of distinguishing non-isomorphic graphs. In this paper, we propose Path Neural Networks (PathNNs), a model that updates node representations by aggregating paths emanating from nodes. We derive three different variants of the PathNN model that aggregate single shortest paths, all shortest paths and all simple paths of length up to K. We prove that two of these variants are strictly more powerful than the 1-WL algorithm, and we experimentally validate our theoretical results. We find that PathNNs can distinguish pairs of non-isomorphic graphs that are indistinguishable by 1-WL, while our most expressive PathNN variant can even distinguish between 3-WL indistinguishable graphs. The different PathNN variants are also evaluated on graph classification and graph regression datasets, where in most cases, they outperform the baseline methods.

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test gasmichel/pathnns_expressive/TUDatasets/main_splits.py official repository ran · our draft was wrong MIT (permissive) · 36224943b5999acf · report
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Tasks

Graph ClassificationGraph Regression

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Graph Classification Peptides-func PathNN AP 0.6816±0.0026 #22 of 44 Archive leaderboard report
Graph Regression Peptides-struct PathNN MAE 0.2545±0.0032 #29 of 39 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

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