Papers › Pard: Permutation-Invariant Autoregressive Diffusion for Graph Generation

Pard: Permutation-Invariant Autoregressive Diffusion for Graph Generation

6 Feb 2024arXiv:2402.03687archive 2025-07-28

Lingxiao Zhao, Xueying Ding, Leman Akoglu

Graph generation has been dominated by autoregressive models due to their simplicity and effectiveness, despite their sensitivity to ordering. Yet diffusion models have garnered increasing attention, as they offer comparable performance while being permutation-invariant. Current graph diffusion models generate graphs in a one-shot fashion, but they require extra features and thousands of denoising steps to achieve optimal performance. We introduce PARD, a Permutation-invariant Auto Regressive Diffusion model that integrates diffusion models with autoregressive methods. PARD harnesses the effectiveness and efficiency of the autoregressive model while maintaining permutation invariance without ordering sensitivity. Specifically, we show that contrary to sets, elements in a graph are not entirely unordered and there is a unique partial order for nodes and edges. With this partial order, PARD generates a graph in a block-by-block, autoregressive fashion, where each block's probability is conditionally modeled by a shared diffusion model with an equivariant network. To ensure efficiency while being expressive, we further propose a higher-order graph transformer, which integrates transformer with PPGN. Like GPT, we extend the higher-order graph transformer to support parallel training of all blocks. Without any extra features, PARD achieves state-of-the-art performance on molecular and non-molecular datasets, and scales to large datasets like MOSES containing 1.9M molecules. Pard is open-sourced at https://github.com/LingxiaoShawn/Pard.

PaperPDFCode

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

Code

lingxiaoshawn/pard officialmentioned in papermentioned on GitHubpytorch report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

Not run by Syntology. Nothing on this page verifies that the listed code works.

Tasks

DenoisingGraph GenerationSensitivity

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Methods

Absolute Position EncodingsAdamAttentionAttention DropoutBPECosine AnnealingDense ConnectionsDiffusionDiscriminative Fine-TuningDropoutGPTGraph TransformerLabel SmoothingLapEigenLaplacian PELayer NormalizationLinear LayerLinear Warmup With Cosine AnnealingMulti-Head AttentionPosition-Wise Feed-Forward LayerResidual ConnectionSoftmaxTransformerWeight Decay

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections