Papers › Open Graph Benchmark: Datasets for Machine Learning on Graphs

Open Graph Benchmark: Datasets for Machine Learning on Graphs

2 May 2020NeurIPS 2020 12arXiv:2005.00687archive 2025-07-28

Weihua Hu, Matthias Fey, Marinka Zitnik, Yuxiao Dong, Hongyu Ren, Bowen Liu, Michele Catasta, Jure Leskovec

We present the Open Graph Benchmark (OGB), a diverse set of challenging and realistic benchmark datasets to facilitate scalable, robust, and reproducible graph machine learning (ML) research. OGB datasets are large-scale, encompass multiple important graph ML tasks, and cover a diverse range of domains, ranging from social and information networks to biological networks, molecular graphs, source code ASTs, and knowledge graphs. For each dataset, we provide a unified evaluation protocol using meaningful application-specific data splits and evaluation metrics. In addition to building the datasets, we also perform extensive benchmark experiments for each dataset. Our experiments suggest that OGB datasets present significant challenges of scalability to large-scale graphs and out-of-distribution generalization under realistic data splits, indicating fruitful opportunities for future research. Finally, OGB provides an automated end-to-end graph ML pipeline that simplifies and standardizes the process of graph data loading, experimental setup, and model evaluation. OGB will be regularly updated and welcomes inputs from the community. OGB datasets as well as data loaders, evaluation scripts, baseline code, and leaderboards are publicly available at https://ogb.stanford.edu .

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snap-stanford/ogb officialmentioned in paperpytorchMIT report
anonymous20221001/sieg_ogb mentioned on GitHubpytorchMIT report
chatterjeeayan/upna mentioned on GitHubpytorch report
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icml2024357/hombasis-gnn mentioned on GitHubpytorchMIT report
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jingsonglv/CFG mentioned on GitHubpytorchMIT report
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ytbai/ogbn_arxiv_dgl mentioned on GitHubpytorch report

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1ran · our draft was wrong
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neighbors anonymous20221001/sieg_ogb/utils.py community (archive-listed) ran · our draft was wrong MIT recorded; this copy not marked cleared · pointer only · fe208db98a8e47fb · report
pad_1d_unsqueeze anonymous20221001/sieg_ogb/graphormer/collator.py community (archive-listed) ran fingerprinted MIT recorded; this copy not marked cleared · pointer only · ed9c8a17fdb3d49c · report
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Tasks

Knowledge GraphsNode Property Prediction

Datasets

Introduced by this paper, per the archive.

OGBOpen Graph Benchmark

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Link Property Prediction ogbl-citation2 Matrix Factorization Ext. data No #22 of 23 Archive leaderboard report
Link Property Prediction ogbl-citation2 Matrix Factorization Number of params 281113505 #22 of 23 Archive leaderboard report
Link Property Prediction ogbl-citation2 Matrix Factorization Test MRR 0.5186 ± 0.0443 #22 of 23 Archive leaderboard report
Link Property Prediction ogbl-citation2 Matrix Factorization Validation MRR 0.5181 ± 0.0436 #22 of 23 Archive leaderboard report
Link Property Prediction ogbl-collab Matrix Factorization Ext. data No #33 of 34 Archive leaderboard report
Link Property Prediction ogbl-collab Matrix Factorization Number of params 60514049 #33 of 34 Archive leaderboard report
Link Property Prediction ogbl-collab Matrix Factorization Test Hits@50 0.3886 ± 0.0029 #33 of 34 Archive leaderboard report
Link Property Prediction ogbl-collab Matrix Factorization Validation Hits@50 0.4896 ± 0.0029 #33 of 34 Archive leaderboard report
Link Property Prediction ogbl-ddi Matrix Factorization Ext. data No #31 of 31 Archive leaderboard report
Link Property Prediction ogbl-ddi Matrix Factorization Number of params 1224193 #31 of 31 Archive leaderboard report
Link Property Prediction ogbl-ddi Matrix Factorization Test Hits@20 0.1368 ± 0.0475 #31 of 31 Archive leaderboard report
Link Property Prediction ogbl-ddi Matrix Factorization Validation Hits@20 0.3370 ± 0.0264 #31 of 31 Archive leaderboard report
Link Property Prediction ogbl-ppa Matrix Factorization Ext. data No #21 of 26 Archive leaderboard report
Link Property Prediction ogbl-ppa Matrix Factorization Number of params 147662849 #21 of 26 Archive leaderboard report
Link Property Prediction ogbl-ppa Matrix Factorization Test Hits@100 0.3229 ± 0.0094 #21 of 26 Archive leaderboard report
Link Property Prediction ogbl-ppa Matrix Factorization Validation Hits@100 0.3228 ± 0.0428 #21 of 26 Archive leaderboard report
Node Property Prediction ogbn-arxiv MLP Ext. data No #85 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv MLP Number of params 110120 #85 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv MLP Test Accuracy 0.5550 ± 0.0023 #85 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv MLP Validation Accuracy 0.5765 ± 0.0012 #85 of 86 Archive leaderboard report
Node Property Prediction ogbn-mag MLP Ext. data No #39 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag MLP Number of params 188509 #39 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag MLP Test Accuracy 0.2692 ± 0.0026 #39 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag MLP Validation Accuracy 0.2626 ± 0.0016 #39 of 39 Archive leaderboard report
Node Property Prediction ogbn-papers100M MLP Ext. data No #20 of 20 Archive leaderboard report
Node Property Prediction ogbn-papers100M MLP Number of params 144044 #20 of 20 Archive leaderboard report
Node Property Prediction ogbn-papers100M MLP Test Accuracy 0.4724 ± 0.0031 #20 of 20 Archive leaderboard report
Node Property Prediction ogbn-papers100M MLP Validation Accuracy 0.4960 ± 0.0029 #20 of 20 Archive leaderboard report
Node Property Prediction ogbn-products MLP Ext. data No #64 of 64 Archive leaderboard report
Node Property Prediction ogbn-products MLP Number of params 103727 #64 of 64 Archive leaderboard report
Node Property Prediction ogbn-products MLP Test Accuracy 0.6106 ± 0.0008 #64 of 64 Archive leaderboard report
Node Property Prediction ogbn-products MLP Validation Accuracy 0.7554 ± 0.0014 #64 of 64 Archive leaderboard report
Node Property Prediction ogbn-proteins MLP Ext. data No #25 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins MLP Number of params 96880 #25 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins MLP Test ROC-AUC 0.7204 ± 0.0048 #25 of 26 Archive leaderboard report
Node Property Prediction ogbn-proteins MLP Validation ROC-AUC 0.7706 ± 0.0014 #25 of 26 Archive leaderboard report

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