Papers › Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Prediction

Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Prediction

29 Oct 2021ICLR 2022 4arXiv:2111.00064archive 2025-07-28

Eli Chien, Wei-Cheng Chang, Cho-Jui Hsieh, Hsiang-Fu Yu, Jiong Zhang, Olgica Milenkovic, Inderjit S Dhillon

Learning on graphs has attracted significant attention in the learning community due to numerous real-world applications. In particular, graph neural networks (GNNs), which take numerical node features and graph structure as inputs, have been shown to achieve state-of-the-art performance on various graph-related learning tasks. Recent works exploring the correlation between numerical node features and graph structure via self-supervised learning have paved the way for further performance improvements of GNNs. However, methods used for extracting numerical node features from raw data are still graph-agnostic within standard GNN pipelines. This practice is sub-optimal as it prevents one from fully utilizing potential correlations between graph topology and node attributes. To mitigate this issue, we propose a new self-supervised learning framework, Graph Information Aided Node feature exTraction (GIANT). GIANT makes use of the eXtreme Multi-label Classification (XMC) formalism, which is crucial for fine-tuning the language model based on graph information, and scales to large datasets. We also provide a theoretical analysis that justifies the use of XMC over link prediction and motivates integrating XR-Transformers, a powerful method for solving XMC problems, into the GIANT framework. We demonstrate the superior performance of GIANT over the standard GNN pipeline on Open Graph Benchmark datasets: For example, we improve the accuracy of the top-ranked method GAMLP from 68.25% to 69.67%, SGC from 63.29% to 66.10% and MLP from 47.24% to 61.10% on the ogbn-papers100M dataset by leveraging GIANT.

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amzn/pecos officialmentioned in papermentioned on GitHubpytorch report
OctoberChang/GAMLP mentioned on GitHubpytorch report
elichienxD/SAGN_with_SLE mentioned on GitHubpytorchMIT report
elichienxD/deep_gcns_torch mentioned on GitHubpytorchMIT report

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3ran · honoured contract
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test amzn/pecos/examples/giant-xrt/OGB_baselines/ogbn-arxiv/gnn.py official repository ran · honoured contract Apache-2.0 (permissive) · 8e6629dff4ea0a71 · report
test amzn/pecos/examples/giant-xrt/OGB_baselines/ogbn-papers100M/mlp_xrt.py official repository ran · honoured contract Apache-2.0 (permissive) · b40f6b945f2312d4 · report
train amzn/pecos/examples/giant-xrt/OGB_baselines/ogbn-arxiv/gnn.py official repository ran · our draft was wrong Apache-2.0 (permissive) · 82f54a95d4951b19 · report
train amzn/pecos/examples/giant-xrt/OGB_baselines/ogbn-papers100M/mlp_xrt.py official repository ran · honoured contract Apache-2.0 (permissive) · 17c5046a153ae409 · report
get_n_params elichienxD/SAGN_with_SLE/src/utils.py community (archive-listed) ran MIT (permissive) · c6acd3e400fc2676 · report
norm_layer elichienxD/deep_gcns_torch/gcn_lib/dense/torch_nn.py community (archive-listed) ran · our draft was wrong MIT (permissive) · 09e6ddb17c0adf28 · report
act_layer elichienxD/deep_gcns_torch/gcn_lib/dense/torch_nn.py community (archive-listed) unverified MIT (permissive) · 81d31aad45664fa2 · report
act_layer elichienxD/deep_gcns_torch/gcn_lib/sparse/torch_nn.py community (archive-listed) unverified MIT (permissive) · 6b65956f32ad8f13 · report
batched_index_select elichienxD/deep_gcns_torch/gcn_lib/dense/torch_nn.py community (archive-listed) unverified MIT (permissive) · c52260211d1aa99f · report
dense_knn_matrix elichienxD/deep_gcns_torch/gcn_lib/dense/torch_edge.py community (archive-listed) unverified MIT (permissive) · 47e2e99992a9c1aa · report
entropy elichienxD/SAGN_with_SLE/src/utils.py community (archive-listed) unverified MIT (permissive) · a4d2591506684852 · report
generate_preds_path elichienxD/SAGN_with_SLE/src/post_process.py community (archive-listed) unverified MIT (permissive) · f31615a9e0aa6f97 · report
knn_graph_matrix elichienxD/deep_gcns_torch/gcn_lib/sparse/torch_edge.py community (archive-listed) unverified MIT (permissive) · 16e18471c8106af0 · report
knn_matrix elichienxD/deep_gcns_torch/gcn_lib/sparse/torch_edge.py community (archive-listed) unverified MIT (permissive) · ed908dafa30d8f12 · report
load_output_files elichienxD/SAGN_with_SLE/src/post_process.py community (archive-listed) unverified MIT (permissive) · eb1a19a333b59f25 · report
load_pretrained_models elichienxD/deep_gcns_torch/utils/ckpt_util.py community (archive-listed) unverified MIT (permissive) · 3be91b595771f70b · report
load_pretrained_optimizer elichienxD/deep_gcns_torch/utils/ckpt_util.py community (archive-listed) unverified MIT (permissive) · c845b58421ba1367 · report
pairwise_distance elichienxD/deep_gcns_torch/gcn_lib/dense/torch_edge.py community (archive-listed) unverified MIT (permissive) · bc7cc66599be9207 · report
test elichienxD/SAGN_with_SLE/src/train_process.py community (archive-listed) unverified MIT (permissive) · 8ccc6f05779c9d3f · report
to_scipy elichienxD/SAGN_with_SLE/src/utils.py community (archive-listed) unverified MIT (permissive) · 9301ba207b35bab1 · report

Tasks

Extreme Multi-Label ClassificationLanguage ModellingLink PredictionMUlTI-LABEL-ClASSIFICATIONMulti-Label ClassificationNode Property PredictionSelf-Supervised Learning

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Node Property Prediction ogbn-arxiv GIANT-XRT+RevGAT+KD (use raw text) Ext. data Yes #13 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+RevGAT+KD (use raw text) Number of params 1304912 #13 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+RevGAT+KD (use raw text) Test Accuracy 0.7615 ± 0.0010 #13 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+RevGAT+KD (use raw text) Validation Accuracy 0.7716 ± 0.0009 #13 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+GraphSAGE (use raw text) Ext. data Yes #19 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+GraphSAGE (use raw text) Number of params 546344 #19 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+GraphSAGE (use raw text) Test Accuracy 0.7435 ± 0.0014 #19 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+GraphSAGE (use raw text) Validation Accuracy 0.7595 ± 0.0011 #19 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+MLP (use raw text) Ext. data Yes #50 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+MLP (use raw text) Number of params 273960 #50 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+MLP (use raw text) Test Accuracy 0.7306 ± 0.0011 #50 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GIANT-XRT+MLP (use raw text) Validation Accuracy 0.7432 ± 0.0009 #50 of 86 Archive leaderboard report
Node Property Prediction ogbn-papers100M GIANT-XRT+GAMLP+RLU (use raw text) Ext. data Yes #2 of 20 Archive leaderboard report
Node Property Prediction ogbn-papers100M GIANT-XRT+GAMLP+RLU (use raw text) Number of params 21551631 #2 of 20 Archive leaderboard report
Node Property Prediction ogbn-papers100M GIANT-XRT+GAMLP+RLU (use raw text) Test Accuracy 0.6967 ± 0.0005 #2 of 20 Archive leaderboard report
Node Property Prediction ogbn-papers100M GIANT-XRT+GAMLP+RLU (use raw text) Validation Accuracy 0.7305 ± 0.0004 #2 of 20 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+SAGN+SLE+C&S (use raw text) Ext. data Yes #12 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+SAGN+SLE+C&S (use raw text) Number of params 1548382 #12 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+SAGN+SLE+C&S (use raw text) Test Accuracy 0.8643 ± 0.0020 #12 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+SAGN+SLE+C&S (use raw text) Validation Accuracy 0.9352 ± 0.0005 #12 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+SAGN+SLE (use raw text) Ext. data Yes #13 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+SAGN+SLE (use raw text) Number of params 1548382 #13 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+SAGN+SLE (use raw text) Test Accuracy 0.8622 ± 0.0022 #13 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+SAGN+SLE (use raw text) Validation Accuracy 0.9363 ± 0.0005 #13 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+GraphSAINT(use raw text) Ext. data Yes #25 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+GraphSAINT(use raw text) Number of params 417583 #25 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+GraphSAINT(use raw text) Test Accuracy 0.8415 ± 0.0022 #25 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+GraphSAINT(use raw text) Validation Accuracy 0.9318 ± 0.0004 #25 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+MLP (use raw text) Ext. data Yes #44 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+MLP (use raw text) Number of params 275759 #44 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+MLP (use raw text) Test Accuracy 0.8049 ± 0.0028 #44 of 64 Archive leaderboard report
Node Property Prediction ogbn-products GIANT-XRT+MLP (use raw text) Validation Accuracy 0.9210 ± 0.0009 #44 of 64 Archive leaderboard report

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