Papers › Modeling Relational Data with Graph Convolutional Networks

Modeling Relational Data with Graph Convolutional Networks

17 Mar 2017arXiv:1703.06103archive 2025-07-28

Michael Schlichtkrull, Thomas N. Kipf, Peter Bloem, Rianne van den Berg, Ivan Titov, Max Welling

Knowledge graphs enable a wide variety of applications, including question answering and information retrieval. Despite the great effort invested in their creation and maintenance, even the largest (e.g., Yago, DBPedia or Wikidata) remain incomplete. We introduce Relational Graph Convolutional Networks (R-GCNs) and apply them to two standard knowledge base completion tasks: Link prediction (recovery of missing facts, i.e. subject-predicate-object triples) and entity classification (recovery of missing entity attributes). R-GCNs are related to a recent class of neural networks operating on graphs, and are developed specifically to deal with the highly multi-relational data characteristic of realistic knowledge bases. We demonstrate the effectiveness of R-GCNs as a stand-alone model for entity classification. We further show that factorization models for link prediction such as DistMult can be significantly improved by enriching them with an encoder model to accumulate evidence over multiple inference steps in the relational graph, demonstrating a large improvement of 29.8% on FB15k-237 over a decoder-only baseline.

PaperPDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="1703.06103")

Code

Syntology Ran 10 of 32 code samples harvested from 12 repositories linked to this paper; 22 have no recorded run. Of those that ran: 1 ran · honoured contract; 1 ran · violated contract; 1 ran · our draft was wrong; 4 ran · fixture could not drive it; 3 ran with no contract checked.

By repository: official repository: 5 samples from 1 repository, 0 ran; community (archive-listed): 26 samples from 11 repositories, 9 ran; 1 identical to code first harvested elsewhere. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

27 repositories listed; official and paper-mentioned ones first.

tkipf/relational-gcn officialmentioned on GitHubtfMIT report
INK-USC/MHGRN mentioned on GitHubpytorch report
INK-USC/RE-Net mentioned on GitHubpytorch report
MichSchli/RelationPrediction mentioned on GitHubtfMIT report
QustKcz/relational-GCN mentioned on GitHubtf report
anilakash/indkgc mentioned on GitHubpytorch report
berlincho/RGCN-pytorch mentioned on GitHubpytorch report
dglai/wsdm2022-challenge mentioned on GitHubpytorch report
giuseppefutia/semi mentioned on GitHubpytorch report
guillaumejaume/tuto-dl-on-graphs mentioned on GitHubpytorchMIT report
parkererickson/crunchBaseGraph mentioned on GitHubpytorch report
predict-idlab/RR-GCN mentioned on GitHubpytorchNOASSERTION report
shijx12/kqapro_baselines mentioned on GitHubpytorchMIT report
susurrant/flow-imputation mentioned on GitHubtf report
thiviyanT/torch-rgcn mentioned on GitHubpytorch report
tkipf/gae mentioned on GitHubtf report
toooooodo/rgcn-linkprediction mentioned on GitHubpytorch report
dmlc/dgl pytorch report
dmlc/dgl pytorch report
dmlc/dgl pytorch report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

32 samples harvested; 10 ran; 1 honoured the contract we drafted; 22 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

1ran · honoured contract
1ran · violated contract
1ran · our draft was wrong
4ran · fixture could not drive it
3ran
22unverified

Licence: 15 of the 32 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from 12 repositories linked to this paper, official or community; each sample names its own and says which. Some samples are identical code Syntology first harvested from another repository; for those, this paper's copy is not located and its licence is not recorded. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

csc_zero_cols tkipf/relational-gcn/rgcn/utils.py official repository unverified MIT (permissive) · e1a1d86eb911298c · report
csr_zero_rows tkipf/relational-gcn/rgcn/utils.py official repository unverified MIT (permissive) · d62c184c10723fda · report
load_sparse_csr tkipf/relational-gcn/rgcn/data_utils.py official repository unverified MIT (permissive) · 02de651d9efcfd65 · report
parse tkipf/relational-gcn/rgcn/data_utils.py official repository unverified MIT (permissive) · 241fcba67ca4a269 · report
sp_vec_from_idx_list tkipf/relational-gcn/rgcn/utils.py official repository unverified MIT (permissive) · 24a38c97cf6b6580 · report
Layer tkipf/gae/gae/layers.py community (archive-listed) ran fingerprinted MIT (permissive) · c101076233bfcdee · report
Model susurrant/spatial-interaction-modeling/SI-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) ran no licence file found · pointer only · 2c3abf305bb94378 · report
Model QustKcz/relational-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) ran MIT (permissive) · e38cd476b8281a12 · report
dot_or_lookup susurrant/spatial-interaction-modeling/SI-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) ran · fixture could not drive it no licence file found · pointer only · d8d50ae992bdb3c9 · report
gcn_reduce parkererickson/crunchBaseGraph/py_scripts/gcn.py community (archive-listed) ran · our draft was wrong no licence file found · pointer only · 4e2d70eb57ed4788 · report
glorot_variance susurrant/spatial-interaction-modeling/SI-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) ran · violated contract fingerprinted no licence file found · pointer only · a9a4285637586425 · report
make_tf_bias susurrant/spatial-interaction-modeling/SI-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) ran · fixture could not drive it fingerprinted no licence file found · pointer only · 2ff4c1185681f679 · report
make_tf_variable susurrant/spatial-interaction-modeling/SI-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) ran · fixture could not drive it no licence file found · pointer only · ce564e1ae279d09c · report
make_tf_variable QustKcz/relational-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) ran · fixture could not drive it MIT (permissive) · eee67eafc4b13ee4 · report
BasisGcn susurrant/spatial-interaction-modeling/SI-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) unverified no licence file found · pointer only · 7e784123e5ac077d · report
BasisGcn QustKcz/relational-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) unverified MIT (permissive) · 6fc2ea51851a4f5d · report
GCNLayer parkererickson/crunchBaseGraph/py_scripts/gcn.py community (archive-listed) unverified no licence file found · pointer only · 2bfb21c319767958 · report
GraphConvolution tkipf/gae/gae/layers.py community (archive-listed) unverified MIT (permissive) · c97818a941d8a0b9 · report
GraphConvolution masakicktashiro/rgcn_pytorch_implementation/layers.py community (archive-listed) unverified no licence file found · pointer only · 8d26f1fa141a632b · report
MessageGcn susurrant/spatial-interaction-modeling/SI-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) unverified no licence file found · pointer only · c0687ad3ab3730c9 · report
MessageGcn QustKcz/relational-GCN/code/encoders/message_gcns/gcn_basis.py community (archive-listed) unverified MIT (permissive) · 1560b6e47bad3798 · report
RGCNConv kracr/document-level-relation-extraction/DocRE-CLiP/code/link prediction/models.py community (archive-listed) unverified Apache-2.0 (permissive) · b858c1faaadce1a7 · report
RGCNLayer giuseppefutia/semi/src/link_prediction/layers.py community (archive-listed) unverified GPL-3.0 (copyleft) · pointer only · aff7c6441824509d · report
RGCNLayer INK-USC/RE-Net/RGCN.py community (archive-listed) unverified no licence file found · pointer only · e1fa7a1467322bab · report
RelationalGraphConvModel berlincho/RGCN-pytorch/models.py community (archive-listed) unverified no licence file found · pointer only · 396309e66058552e · report
RelationalGraphConvolutionNC thiviyanT/torch-rgcn/torch_rgcn/layers.py community (archive-listed) unverified MIT (permissive) · c746dc3cd7142fb7 · report
gcn_message parkererickson/crunchBaseGraph/py_scripts/gcn.py community (archive-listed) unverified no licence file found · pointer only · a8e4cdc01a9f23a6 · report
read MichSchli/RelationPrediction/code/common/settings_reader.py community (archive-listed) unverified MIT (permissive) · aecde0e9a66b3279 · report
read_dictionary MichSchli/RelationPrediction/code/common/io.py community (archive-listed) unverified MIT (permissive) · 00587b6b3a684969 · report
read_triplet_file MichSchli/RelationPrediction/code/common/io.py community (archive-listed) unverified MIT (permissive) · d945735b7bb56f17 · report
read_triplets_as_list MichSchli/RelationPrediction/code/common/io.py community (archive-listed) unverified MIT (permissive) · 536bd3fa07b27fed · report
get_layer_uid identical code first harvested elsewhere ran · honoured contract fingerprinted licence of this copy not recorded · addac9c28c065096 · report

Tasks

DecoderGeneral ClassificationGraph ClassificationHeterogeneous Node ClassificationInformation RetrievalKnowledge Base CompletionKnowledge GraphsLink PredictionNode ClassificationNode Property PredictionRetrieval

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Heterogeneous Node Classification ACM (Heterogeneous Node Classification) RGCN Macro-F1 91.55 #6 of 11 Archive leaderboard report
Heterogeneous Node Classification ACM (Heterogeneous Node Classification) RGCN Micro-F1 91.41 #6 of 11 Archive leaderboard report
Heterogeneous Node Classification DBLP (Heterogeneous Node Classification) RGCN Macro-F1 91.52 #7 of 11 Archive leaderboard report
Heterogeneous Node Classification DBLP (Heterogeneous Node Classification) RGCN Micro-F1 92.07 #7 of 11 Archive leaderboard report
Heterogeneous Node Classification Freebase (Heterogeneous Node Classification) RGCN Macro-F1 46.78 #5 of 9 Archive leaderboard report
Heterogeneous Node Classification Freebase (Heterogeneous Node Classification) RGCN Micro-F1 58.33 #5 of 9 Archive leaderboard report
Heterogeneous Node Classification IMDB (Heterogeneous Node Classification) RGCN Macro-F1 58.85 #7 of 11 Archive leaderboard report
Heterogeneous Node Classification IMDB (Heterogeneous Node Classification) RGCN Micro-F1 62.05 #7 of 11 Archive leaderboard report
Heterogeneous Node Classification OAG-L1-Field RGCN MRR 84.92 #4 of 5 Archive leaderboard report
Heterogeneous Node Classification OAG-L1-Field RGCN NDCG 85.91 #4 of 5 Archive leaderboard report
Heterogeneous Node Classification OAG-Venue RGCN MRR 31.51 #3 of 5 Archive leaderboard report
Heterogeneous Node Classification OAG-Venue RGCN NDCG 48.93 #3 of 5 Archive leaderboard report
Node Classification AIFB R-GCN Accuracy 95.83 #1 of 7 Archive leaderboard report
Node Classification AM R-GCN Accuracy 89.29 #4 of 8 Archive leaderboard report
Node Classification BGS R-GCN Accuracy 83.10 #6 of 7 Archive leaderboard report
Node Classification MUTAG R-GCN Accuracy 73.23 #5 of 6 Archive leaderboard report
Node Property Prediction ogbn-mag R-GSN Ext. data No #26 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag R-GSN Number of params 154373028 #26 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag R-GSN Test Accuracy 0.5032 ± 0.0037 #26 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag R-GSN Validation Accuracy 0.5182 ± 0.0041 #26 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag Full-batch R-GCN Ext. data No #34 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag Full-batch R-GCN Number of params 154366772 #34 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag Full-batch R-GCN Test Accuracy 0.3977 ± 0.0046 #34 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag Full-batch R-GCN Validation Accuracy 0.4084 ± 0.0041 #34 of 39 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

Methods

Introduced by this paper: RGCN

RGCN

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections