Papers › Modeling Graphs with Vertex Replacement Grammars

Modeling Graphs with Vertex Replacement Grammars

11 Aug 2019arXiv:1908.03837links table onlyarchive 2025-07-28

Satyaki Sikdar, Justus Hibshman, Tim Weninger

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One of the principal goals of graph modeling is to capture the building blocks of network data in order to study various physical and natural phenomena. Recent work at the intersection of formal language theory and graph theory has explored the use of graph grammars for graph modeling. However, existing graph grammar formalisms, like Hyperedge Replacement Grammars, can only operate on small tree-like graphs. The present work relaxes this restriction by revising a different graph grammar formalism called Vertex Replacement Grammars (VRGs). We show that a variant of the VRG called Clustering-based Node Replacement Grammar (CNRG) can be efficiently extracted from many hierarchical clusterings of a graph. We show that CNRGs encode a succinct model of the graph, yet faithfully preserves the structure of the original graph. In experiments on large real-world datasets, we show that graphs generated from the CNRG model exhibit a diverse range of properties that are similar to those found in the original networks.

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GCD satyakisikdar/VRG/src/GCD.py official repository unverified MIT (permissive) · f8c211509d36a438 · report
create_tree satyakisikdar/VRG/src/Tree.py official repository unverified MIT (permissive) · 30db7dcbebd59a7d · report
cvm_distance satyakisikdar/VRG/analyze_graphs.py official repository unverified MIT (permissive) · 01dc66a58b01373e · report
external_orca satyakisikdar/VRG/src/GCD.py official repository unverified MIT (permissive) · 01ef231f4f4a9937 · report
external_rage satyakisikdar/VRG/src/GCD.py official repository unverified MIT (permissive) · f68b204caa8a5571 · report
fast_bp satyakisikdar/VRG/analyze_graphs.py official repository unverified MIT (permissive) · 31a8eb32d035d87f · report
gamma_code satyakisikdar/VRG/src/MDL.py official repository unverified MIT (permissive) · 592a86cbae541df1 · report
get_level_wise_mdl satyakisikdar/VRG/src/analysis.py official repository unverified MIT (permissive) · 61400a85a468407d · report
hop_plot satyakisikdar/VRG/src/analysis.py official repository unverified MIT (permissive) · 3d86f6a248344f37 · report
lambda_dist satyakisikdar/VRG/analyze_graphs.py official repository unverified MIT (permissive) · 33aa8259c70fd86e · report
nbits satyakisikdar/VRG/src/MDL.py official repository unverified MIT (permissive) · 9f483f37cf2ee9c9 · report

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