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Mixture of Experts Meets Decoupled Message Passing: Towards General and Adaptive Node Classification

11 Dec 2024arXiv:2412.08193archive 2025-07-28

Xuanze Chen, Jiajun Zhou, Shanqing Yu, Qi Xuan

Graph neural networks excel at graph representation learning but struggle with heterophilous data and long-range dependencies. And graph transformers address these issues through self-attention, yet face scalability and noise challenges on large-scale graphs. To overcome these limitations, we propose GNNMoE, a universal model architecture for node classification. This architecture flexibly combines fine-grained message-passing operations with a mixture-of-experts mechanism to build feature encoding blocks. Furthermore, by incorporating soft and hard gating layers to assign the most suitable expert networks to each node, we enhance the model's expressive power and adaptability to different graph types. In addition, we introduce adaptive residual connections and an enhanced FFN module into GNNMoE, further improving the expressiveness of node representation. Extensive experimental results demonstrate that GNNMoE performs exceptionally well across various types of graph data, effectively alleviating the over-smoothing issue and global noise, enhancing model robustness and adaptability, while also ensuring computational efficiency on large-scale graphs.

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GISec-Team/GNNMoE officialmentioned on GitHubpytorch report

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Tasks

Computational EfficiencyGraph Representation LearningMixture-of-ExpertsNode ClassificationNode Property PredictionRepresentation Learning

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Node Classification Actor GNNMoE(SAGE-like P) Accuracy 37.97±1.01 #11 of 62 Archive leaderboard report
Node Classification Actor GNNMoE(GAT-like P) Accuracy 37.76±0.98 #17 of 62 Archive leaderboard report
Node Classification Actor GNNMoE(GCN-like P) Accuracy 37.59±1.36 #20 of 62 Archive leaderboard report
Node Classification Amazon Computers GNNMoE(GCN-like P) Accuracy 92.17±0.50 #4 of 12 Archive leaderboard report
Node Classification Amazon Computers GNNMoE(GAT-like P) Accuracy 91.98±0.46 #5 of 12 Archive leaderboard report
Node Classification Amazon Computers GNNMoE(SAGE-like P) Accuracy 91.85±0.39 #6 of 12 Archive leaderboard report
Node Classification Amazon Photo GNNMoE(GCN-like P) Accuracy 95.81±0.41 #4 of 11 Archive leaderboard report
Node Classification Amazon Photo GNNMoE(GAT-like P) Accuracy 95.71±0.37 #5 of 11 Archive leaderboard report
Node Classification Amazon Photo GNNMoE(SAGE-like P) Accuracy 95.46±0.24 #6 of 11 Archive leaderboard report
Node Classification Chameleon (48%/32%/20% fixed splits) GNNMoE(GCN-like P) Accuracy 47.19±2.93 #2 of 4 Archive leaderboard report
Node Classification Chameleon (48%/32%/20% fixed splits) GNNMoE(SAGE-like P) Accuracy 45.73±3.19 #3 of 4 Archive leaderboard report
Node Classification Chameleon (48%/32%/20% fixed splits) GNNMoE(GAT-like P) Accuracy 45.56±3.94 #4 of 4 Archive leaderboard report
Node Classification Coauthor CS GNNMoE(GCN-like P) Accuracy 95.81±0.26 #5 of 24 Archive leaderboard report
Node Classification Coauthor CS GNNMoE(GAT-like P) Accuracy 95.72±0.23 #8 of 24 Archive leaderboard report
Node Classification Coauthor CS GNNMoE(SAGE-like P) Accuracy 95.68±0.24 #10 of 24 Archive leaderboard report
Node Classification Coauthor Physics GNNMoE(GAT-like P) Accuracy 97.05±0.19 #6 of 14 Archive leaderboard report
Node Classification Coauthor Physics GNNMoE(GCN-like P) Accuracy 97.03±0.13 #7 of 14 Archive leaderboard report
Node Classification Coauthor Physics GNNMoE(SAGE-like P) Accuracy 96.81±0.22 #12 of 14 Archive leaderboard report
Node Classification Facebook GNNMoE(GCN-like P) Accuracy 95.53±0.35 #1 of 8 Archive leaderboard report
Node Classification Facebook GNNMoE(GAT-like P) Accuracy 95.21±0.25 #2 of 8 Archive leaderboard report
Node Classification Facebook GNNMoE(SAGE-like P) Accuracy 94.63±0.36 #3 of 8 Archive leaderboard report
Node Classification Penn94 GNNMoE(GCN-like P) Accuracy 85.11±0.39 #6 of 32 Archive leaderboard report
Node Classification Penn94 GNNMoE(SAGE-like P) Accuracy 84.05±0.37 #12 of 32 Archive leaderboard report
Node Classification Penn94 GNNMoE(GAT-like P) Accuracy 81.98±0.47 #16 of 32 Archive leaderboard report
Node Classification Squirrel (48%/32%/20% fixed splits) GNNMoE(GCN-like P) Accuracy 44.02±2.59 #2 of 4 Archive leaderboard report
Node Classification Squirrel (48%/32%/20% fixed splits) GNNMoE(SAGE-like P) Accuracy 39.19±2.84 #3 of 4 Archive leaderboard report
Node Classification Squirrel (48%/32%/20% fixed splits) GNNMoE(GAT-like P) Accuracy 39.19±3.94 #4 of 4 Archive leaderboard report
Node Classification roman-empire GNNMoE(GAT-like P) Accuracy (% ) 87.29±0.60 #5 of 7 Archive leaderboard report
Node Classification roman-empire GNNMoE(SAGE-like P) Accuracy (% ) 86.00±0.45 #6 of 7 Archive leaderboard report
Node Classification roman-empire GNNMoE(GCN-like P) Accuracy (% ) 85.05±0.55 #7 of 7 Archive leaderboard report
Node Classification tolokers GNNMoE(GAT-like P) AUCROC 85.45±0.94 #2 of 4 Archive leaderboard report
Node Classification tolokers GNNMoE(GCN-like P) AUCROC 84.77±0.93 #3 of 4 Archive leaderboard report
Node Classification tolokers GNNMoE(SAGE-like P) AUCROC 83.96±0.75 #4 of 4 Archive leaderboard report
Node Property Prediction ogbn-arxiv GNNMoE(GAT-like P) Test Accuracy 0.7245±0.0032 #60 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GNNMoE(GCN-like P) Test Accuracy 0.7229±0.0016 #61 of 86 Archive leaderboard report
Node Property Prediction ogbn-arxiv GNNMoE(SAGE-like P) Test Accuracy 0.7194±0.0025 #73 of 86 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

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