Papers › JANA: Jointly Amortized Neural Approximation of Complex Bayesian Models

JANA: Jointly Amortized Neural Approximation of Complex Bayesian Models

17 Feb 2023arXiv:2302.09125archive 2025-07-28

Stefan T. Radev, Marvin Schmitt, Valentin Pratz, Umberto Picchini, Ullrich Köthe, Paul-Christian Bürkner

This work proposes ``jointly amortized neural approximation'' (JANA) of intractable likelihood functions and posterior densities arising in Bayesian surrogate modeling and simulation-based inference. We train three complementary networks in an end-to-end fashion: 1) a summary network to compress individual data points, sets, or time series into informative embedding vectors; 2) a posterior network to learn an amortized approximate posterior; and 3) a likelihood network to learn an amortized approximate likelihood. Their interaction opens a new route to amortized marginal likelihood and posterior predictive estimation -- two important ingredients of Bayesian workflows that are often too expensive for standard methods. We benchmark the fidelity of JANA on a variety of simulation models against state-of-the-art Bayesian methods and propose a powerful and interpretable diagnostic for joint calibration. In addition, we investigate the ability of recurrent likelihood networks to emulate complex time series models without resorting to hand-crafted summary statistics.

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compare_estimates bayesflow-org/jana-paper/experiments/diffusion_model/plotting_functions.py official repository unverified MIT (permissive) · 793a20f4fa57a0fa · report
compare_point_estimates bayesflow-org/jana-paper/experiments/diffusion_model/plotting_functions.py official repository unverified MIT (permissive) · 2889d8b7dde18304 · report
configurator bayesflow-org/jana-paper/experiments/diffusion_model/train_likelihood.py official repository unverified MIT (permissive) · b2e5291d7492d05d · report
configurator bayesflow-org/jana-paper/experiments/diffusion_model/train_posterior.py official repository unverified MIT (permissive) · 8062c3b4c7a13ce2 · report
configure_input bayesflow-org/jana-paper/experiments/two_moons/jana.py official repository unverified MIT (permissive) · 329e64402210d50c · report
bootstrapped_metrics bayesflow-org/hierarchical-model-comparison/src/python/metrics.py community (archive-listed) unverified MIT (permissive) · 832d36c9d536f0fd · report
load_training_data bayesflow-org/hierarchical-model-comparison/src/python/training.py community (archive-listed) unverified MIT (permissive) · e3f8f9ec5b2f332f · report
performance_metrics bayesflow-org/hierarchical-model-comparison/src/python/metrics.py community (archive-listed) unverified MIT (permissive) · 14742624093d9271 · report
softmax_loss bayesflow-org/hierarchical-model-comparison/src/python/losses.py community (archive-listed) unverified MIT (permissive) · e243a18d238aa54b · report
variable_n_obs bayesflow-org/hierarchical-model-comparison/src/python/helpers.py community (archive-listed) unverified MIT (permissive) · edda84346a398cfd · report
variable_sizes bayesflow-org/hierarchical-model-comparison/src/python/helpers.py community (archive-listed) unverified MIT (permissive) · b0841db97e37ccfb · report

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