Papers › Investigating the Interplay between Features and Structures in Graph Learning

Investigating the Interplay between Features and Structures in Graph Learning

18 Aug 2023arXiv:2308.09570archive 2025-07-28

Daniele Castellana, Federico Errica

In the past, the dichotomy between homophily and heterophily has inspired research contributions toward a better understanding of Deep Graph Networks' inductive bias. In particular, it was believed that homophily strongly correlates with better node classification predictions of message-passing methods. More recently, however, researchers pointed out that such dichotomy is too simplistic as we can construct node classification tasks where graphs are completely heterophilic but the performances remain high. Most of these works have also proposed new quantitative metrics to understand when a graph structure is useful, which implicitly or explicitly assume the correlation between node features and target labels. Our work empirically investigates what happens when this strong assumption does not hold, by formalising two generative processes for node classification tasks that allow us to build and study ad-hoc problems. To quantitatively measure the influence of the node features on the target labels, we also use a metric we call Feature Informativeness. We construct six synthetic tasks and evaluate the performance of six models, including structure-agnostic ones. Our findings reveal that previously defined metrics are not adequate when we relax the above assumption. Our contribution to the workshop aims at presenting novel research findings that could help advance our understanding of the field.

PaperPDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2308.09570")

Code

Syntology Ran 9 of 17 code samples harvested from 1 repository linked to this paper; 8 have no recorded run. Of those that ran: 9 ran with no contract checked.

By repository: official repository: 17 samples from 1 repository, 9 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

danielecastellana22/feature-structure-interplay-graph-learning officialmentioned in papermentioned on GitHubpytorch report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

17 samples harvested; 9 ran; 0 honoured the contract we drafted; 8 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

9ran
8unverified

Licence: 17 of the 17 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from danielecastellana22/feature-structure-interplay-graph-learning. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

compute_adjusted_homophily danielecastellana22/feature-structure-interplay-graph-learning/datasets/stats.py official repository ran no licence file found · pointer only · f1783702d3a27989 · report
compute_edge_homophily danielecastellana22/feature-structure-interplay-graph-learning/datasets/stats.py official repository ran no licence file found · pointer only · 7cab3be1ff5f5ced · report
count_triangles_graph_generator danielecastellana22/feature-structure-interplay-graph-learning/datasets/synthetic.py official repository ran no licence file found · pointer only · 4f827b6d024961ee · report
create_datatime_dir danielecastellana22/feature-structure-interplay-graph-learning/utils/misc.py official repository ran no licence file found · pointer only · 753b7eb72dd834cd · report
from_json_file danielecastellana22/feature-structure-interplay-graph-learning/utils/serialisation.py official repository ran no licence file found · pointer only · 2053e56c69708bc1 · report
multipartite_graph_generator danielecastellana22/feature-structure-interplay-graph-learning/datasets/synthetic.py official repository ran no licence file found · pointer only · ab0d871fbe30b752 · report
roc_auc_metric danielecastellana22/feature-structure-interplay-graph-learning/datasets/metrics.py official repository ran no licence file found · pointer only · 23d323bc59dd36a9 · report
set_initial_seed danielecastellana22/feature-structure-interplay-graph-learning/utils/misc.py official repository ran fingerprinted no licence file found · pointer only · 2e05cb10fb231646 · report
string2class danielecastellana22/feature-structure-interplay-graph-learning/utils/misc.py official repository ran no licence file found · pointer only · 4812a74e5f733314 · report
accuracy_metric danielecastellana22/feature-structure-interplay-graph-learning/datasets/metrics.py official repository unverified no licence file found · pointer only · 947d853de09b48a3 · report
check_results danielecastellana22/feature-structure-interplay-graph-learning/utils/execution.py official repository unverified no licence file found · pointer only · fd5ba1b44df150ac · report
compute_label_informativeness danielecastellana22/feature-structure-interplay-graph-learning/datasets/stats.py official repository unverified no licence file found · pointer only · abe8d74f0a6e77d9 · report
count_neighbours_type_graph_generator danielecastellana22/feature-structure-interplay-graph-learning/datasets/synthetic.py official repository unverified no licence file found · pointer only · 24cf9ab39b58cd54 · report
create_object_from_config danielecastellana22/feature-structure-interplay-graph-learning/utils/configuration.py official repository unverified no licence file found · pointer only · 4bd84481681748cd · report
plot_node_embs danielecastellana22/feature-structure-interplay-graph-learning/utils/visualisation.py official repository unverified no licence file found · pointer only · 17388c06f4ada6ec · report
to_json_file danielecastellana22/feature-structure-interplay-graph-learning/utils/serialisation.py official repository unverified no licence file found · pointer only · 69fb38ceb2845c07 · report
to_yaml_file danielecastellana22/feature-structure-interplay-graph-learning/utils/serialisation.py official repository unverified no licence file found · pointer only · 1ea39943e19e4b7b · report

Tasks

Graph LearningInductive BiasInformativenessNode Classification

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections