Papers › Port-Hamiltonian Architectural Bias for Long-Range Propagation in Deep Graph Networks

Port-Hamiltonian Architectural Bias for Long-Range Propagation in Deep Graph Networks

27 May 2024arXiv:2405.17163archive 2025-07-28

Simon Heilig, Alessio Gravina, Alessandro Trenta, Claudio Gallicchio, Davide Bacciu

The dynamics of information diffusion within graphs is a critical open issue that heavily influences graph representation learning, especially when considering long-range propagation. This calls for principled approaches that control and regulate the degree of propagation and dissipation of information throughout the neural flow. Motivated by this, we introduce (port-)Hamiltonian Deep Graph Networks, a novel framework that models neural information flow in graphs by building on the laws of conservation of Hamiltonian dynamical systems. We reconcile under a single theoretical and practical framework both non-dissipative long-range propagation and non-conservative behaviors, introducing tools from mechanical systems to gauge the equilibrium between the two components. Our approach can be applied to general message-passing architectures, and it provides theoretical guarantees on information conservation in time. Empirical results prove the effectiveness of our port-Hamiltonian scheme in pushing simple graph convolutional architectures to state-of-the-art performance in long-range benchmarks.

PaperPDFCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2405.17163")

Code

Syntology Ran 6 of 10 code samples harvested from 1 repository linked to this paper; 4 have no recorded run. Of those that ran: 6 ran with no contract checked.

By repository: found in paper text by Syntology: 10 samples from 1 repository, 6 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

simonheilig/porthamiltonian-dgn found in paper text by SyntologyMIT report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

10 samples harvested; 6 ran; 0 honoured the contract we drafted; 4 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

6ran
4unverified

Licence: 0 of the 10 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from simonheilig/porthamiltonian-dgn. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

eval_ap simonheilig/porthamiltonian-dgn/graph_prop_pred/train_GraphProp.py found in paper text by Syntology ran MIT (permissive) · adcdf6d3cfdc929c · report
line_graph simonheilig/porthamiltonian-dgn/graph_transfer_task/graph_transfer_data.py found in paper text by Syntology ran MIT (permissive) · 7cf0c0aa4c265cb4 · report
ring_transfer_graph simonheilig/porthamiltonian-dgn/graph_transfer_task/graph_transfer_data.py found in paper text by Syntology ran MIT (permissive) · 57358b1aca0d6ae1 · report
split simonheilig/porthamiltonian-dgn/minesweeper/model_selection.py found in paper text by Syntology ran MIT (permissive) · 67cf67f9cfc213a8 · report
train simonheilig/porthamiltonian-dgn/graph_prop_pred/train_GraphProp.py found in paper text by Syntology ran MIT (permissive) · ccdff96dde8c6510 · report
update_csv simonheilig/porthamiltonian-dgn/graph_transfer_task/utils.py found in paper text by Syntology ran MIT (permissive) · 51c5c74c2f169b4a · report
cliquepath_transfer_graph simonheilig/porthamiltonian-dgn/graph_transfer_task/graph_transfer_data.py found in paper text by Syntology unverified MIT (permissive) · 9e23c0bf026e8677 · report
is_uninitialized_parameter simonheilig/porthamiltonian-dgn/graph_prop_pred/models/phdgn_utils.py found in paper text by Syntology unverified MIT (permissive) · 4c8636912cd02526 · report
reset_bias_ simonheilig/porthamiltonian-dgn/graph_prop_pred/models/phdgn_utils.py found in paper text by Syntology unverified MIT (permissive) · 171608f792ff5805 · report
reset_weight_ simonheilig/porthamiltonian-dgn/graph_prop_pred/models/phdgn_utils.py found in paper text by Syntology unverified MIT (permissive) · 37dc8fcbfe178a3d · report

Tasks

Graph Representation LearningRepresentation Learning

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Methods

Diffusion

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections