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Hypercube-RAG: Hypercube-Based Retrieval-Augmented Generation for In-domain Scientific Question-Answering

25 May 2025arXiv:2505.19288archive 2025-07-28

Jimeng Shi, Sizhe Zhou, Bowen Jin, Wei Hu, Shaowen Wang, Giri Narasimhan, Jiawei Han

Large language models (LLMs) often need to incorporate external knowledge to solve theme-specific problems. Retrieval-augmented generation (RAG), which empowers LLMs to generate more qualified responses with retrieved external data and knowledge, has shown its high promise. However, traditional semantic similarity-based RAGs struggle to return concise yet highly relevant information for domain knowledge-intensive tasks, such as scientific question-answering (QA). Built on a multi-dimensional (cube) structure called Hypercube, which can index documents in an application-driven, human-defined, multi-dimensional space, we introduce the Hypercube-RAG, a novel RAG framework for precise and efficient retrieval. Given a query, Hypercube-RAG first decomposes it based on its entities and topics and then retrieves relevant documents from cubes by aligning these decomposed components with hypercube dimensions. Experiments on three in-domain scientific QA datasets demonstrate that our method improves accuracy by 3.7% and boosts retrieval efficiency by 81.2%, measured as relative gains over the strongest RAG baseline. More importantly, our Hypercube-RAG inherently offers explainability by revealing the underlying predefined hypercube dimensions used for retrieval. The code and data sets are available at https://github.com/JimengShi/Hypercube-RAG.

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Question Answering RAG Retrieval Retrieval-augmented Generation Semantic Similarity Semantic Textual Similarity

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Adam Attention Attention Dropout BART BERT BPE Dense Connections Dropout Layer Normalization Linear Layer Linear Warmup With Linear Decay Multi-Head Attention RAG Residual Connection Softmax Weight Decay WordPiece

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